Variant report

Variant	rs12766074
Chromosome Location	chr10:99315646-99315647
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10748699	0.83[EUR][1000 genomes]
rs10748700	0.82[EUR][1000 genomes]
rs10882957	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882959	0.80[EUR][1000 genomes]
rs10882961	0.83[EUR][1000 genomes]
rs10882962	0.84[EUR][1000 genomes]
rs10882963	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882965	0.84[EUR][1000 genomes]
rs10882966	0.82[EUR][1000 genomes]
rs10882967	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1107517	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107518	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11189267	0.89[ASN][1000 genomes]
rs11189270	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11189274	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11189275	0.84[EUR][1000 genomes]
rs11189278	0.84[EUR][1000 genomes]
rs11189280	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11189284	0.84[ASN][1000 genomes]
rs11511362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11528108	0.83[EUR][1000 genomes]
rs11528109	0.83[EUR][1000 genomes]
rs11814566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12243136	0.90[EUR][1000 genomes]
rs12355384	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12357750	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12415338	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12767760	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12774288	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12775868	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12779451	0.83[AMR][1000 genomes]
rs12783481	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1417408	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1572860	0.85[EUR][1000 genomes]
rs17108059	0.85[EUR][1000 genomes]
rs3814554	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4244325	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4244326	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4635019	0.84[EUR][1000 genomes]
rs4919108	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4919109	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66521603	0.82[ASN][1000 genomes]
rs68084394	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7077976	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094973	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7342022	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7475470	0.84[EUR][1000 genomes]
rs7475851	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7902642	0.81[EUR][1000 genomes]
rs7908668	0.84[EUR][1000 genomes]
rs7911122	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv1047359	chr10:99306501-99369013	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
2	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
3	chr10:99303800-99327800	Weak transcription	Ovary	ovary
4	chr10:99309800-99316200	Weak transcription	Liver	Liver
5	chr10:99310400-99327600	Weak transcription	Lung	lung
6	chr10:99310400-99327800	Weak transcription	Right Ventricle	heart
7	chr10:99310800-99320600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:99310800-99326400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:99310800-99327600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:99310800-99327600	Weak transcription	Spleen	Spleen
11	chr10:99311400-99327600	Weak transcription	Left Ventricle	heart
12	chr10:99311400-99328800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:99313800-99315800	Weak transcription	HMEC	breast
14	chr10:99313800-99316000	Weak transcription	NHEK	skin
15	chr10:99313800-99319400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:99313800-99320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:99313800-99320200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:99313800-99320200	Weak transcription	Adipose Nuclei	Adipose
19	chr10:99313800-99320200	Weak transcription	Osteobl	bone
20	chr10:99313800-99321800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:99313800-99327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:99313800-99327600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:99313800-99327600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:99313800-99327600	Weak transcription	NHLF	lung
25	chr10:99313800-99329800	Weak transcription	Gastric	stomach
26	chr10:99313800-99330600	Weak transcription	Brain Angular Gyrus	brain
27	chr10:99314000-99321600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr10:99314000-99326200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr10:99314800-99319000	Weak transcription	Psoas Muscle	Psoas
30	chr10:99314800-99320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:99315000-99320200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr10:99315000-99321600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:99315000-99329000	Weak transcription	HSMMtube	muscle
34	chr10:99315400-99316000	Weak transcription	GM12878-XiMat	blood
35	chr10:99315400-99318800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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