Variant report

Variant	rs12779451
Chromosome Location	chr10:99293327-99293328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99280525..99282276-chr10:99293134..99294655,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1107517	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11189266	0.81[EUR][1000 genomes]
rs11189267	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11189270	0.83[ASN][1000 genomes]
rs11189274	0.83[AMR][1000 genomes]
rs11511362	0.83[AMR][1000 genomes]
rs11814566	0.83[AMR][1000 genomes]
rs12355384	0.82[ASN][1000 genomes]
rs12415338	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12766074	0.83[AMR][1000 genomes]
rs12767760	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12774288	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12775868	0.84[AMR][1000 genomes]
rs12783481	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1417408	0.83[ASN][1000 genomes]
rs4919108	0.83[ASN][1000 genomes]
rs4919109	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs68084394	0.82[ASN][1000 genomes]
rs7077976	0.83[AMR][1000 genomes]
rs7475851	0.82[AMR][1000 genomes]
rs7911122	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99275000-99293800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99277800-99301800	Weak transcription	Gastric	stomach
3	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:99278200-99298800	Weak transcription	Aorta	Aorta
5	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
6	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
9	chr10:99282400-99298200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:99282800-99299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:99285200-99298600	Weak transcription	Right Atrium	heart
12	chr10:99286000-99293600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:99286200-99299200	Weak transcription	Ovary	ovary
14	chr10:99286400-99293800	Weak transcription	Psoas Muscle	Psoas
15	chr10:99287200-99298200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:99290000-99298200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:99290000-99299400	Weak transcription	Right Ventricle	heart
18	chr10:99291000-99294200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:99291000-99295000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:99291000-99295000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:99291200-99293400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:99291200-99293400	Enhancers	Osteobl	bone
23	chr10:99291200-99295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:99291400-99293400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:99291400-99293400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:99291400-99294200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr10:99291400-99295000	Enhancers	Fetal Muscle Trunk	muscle
28	chr10:99291600-99294200	Enhancers	Fetal Muscle Leg	muscle
29	chr10:99291800-99295000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:99291800-99297800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:99292000-99298200	Weak transcription	HUVEC	blood vessel
32	chr10:99292000-99298200	Weak transcription	NHDF-Ad	bronchial
33	chr10:99292000-99298600	Weak transcription	Lung	lung
34	chr10:99292400-99293400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:99292400-99293400	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:99292400-99294600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr10:99292400-99295000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr10:99292400-99295000	Enhancers	Brain Anterior Caudate	brain
39	chr10:99292600-99293400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:99292600-99293400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:99292600-99293400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr10:99292600-99293400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr10:99292600-99293600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:99292600-99294000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr10:99292600-99294000	Enhancers	HSMM	muscle
46	chr10:99292600-99294200	Enhancers	Placenta	Placenta
47	chr10:99292600-99294200	Enhancers	NH-A	brain
48	chr10:99292600-99294800	Enhancers	Esophagus	oesophagus
49	chr10:99292600-99295000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:99292600-99295000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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