Variant report

Variant	rs10748698
Chromosome Location	chr10:99303977-99303978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99300634..99304686-chr10:99330230..99333325,5	MCF-7	breast:
2	chr10:99255227..99260148-chr10:99300104..99304804,10	MCF-7	breast:
3	chr10:99298484..99301202-chr10:99302783..99304402,2	MCF-7	breast:
4	chr10:99303622..99306407-chr10:99309864..99312001,2	K562	blood:
5	chr10:99295454..99297833-chr10:99302850..99305384,2	MCF-7	breast:
6	chr10:99296427..99298411-chr10:99301933..99303987,2	K562	blood:
7	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
8	chr10:99256059..99259971-chr10:99300252..99304004,11	MCF-7	breast:
9	chr10:99288750..99291143-chr10:99301999..99304983,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155229	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000165887	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10748699	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10748700	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882956	0.89[ASN][1000 genomes]
rs10882957	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10882959	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882961	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882962	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882963	0.87[EUR][1000 genomes]
rs10882965	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882966	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1107517	0.83[EUR][1000 genomes]
rs1107518	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11189266	0.89[ASN][1000 genomes]
rs11189270	0.87[EUR][1000 genomes]
rs11189274	0.80[EUR][1000 genomes]
rs11189275	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189278	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11528108	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11528109	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12219064	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12221474	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12243136	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12774288	0.82[EUR][1000 genomes]
rs12783481	0.84[EUR][1000 genomes]
rs1417408	0.84[EUR][1000 genomes]
rs1572860	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108059	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4635019	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4919108	0.87[EUR][1000 genomes]
rs4919109	0.83[EUR][1000 genomes]
rs68084394	0.81[EUR][1000 genomes]
rs7077211	0.85[ASN][1000 genomes]
rs7342022	0.82[EUR][1000 genomes]
rs7475470	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7902642	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7921278	0.89[ASN][1000 genomes]
rs7921505	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99298200-99304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:99298200-99304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:99298200-99304200	Enhancers	Brain Hippocampus Middle	brain
4	chr10:99298400-99304000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr10:99298400-99304400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:99298600-99304000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:99299400-99304200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:99300600-99306600	Weak transcription	Fetal Kidney	kidney
9	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:99301200-99304200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:99301600-99304000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:99301600-99304000	Enhancers	Psoas Muscle	Psoas
13	chr10:99301800-99304000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:99301800-99304000	Enhancers	Brain Cingulate Gyrus	brain
15	chr10:99301800-99304200	Enhancers	Right Atrium	heart
16	chr10:99301800-99304400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:99302200-99304200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:99302200-99308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:99302400-99304200	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:99302600-99308800	Weak transcription	Fetal Thymus	thymus
21	chr10:99302800-99304200	Enhancers	HMEC	breast
22	chr10:99303000-99327600	Weak transcription	Aorta	Aorta
23	chr10:99303200-99304200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:99303200-99304400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:99303200-99305400	Weak transcription	Fetal Intestine Small	intestine
26	chr10:99303200-99308400	Weak transcription	HepG2	liver
27	chr10:99303200-99308800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:99303200-99309000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr10:99303200-99327600	Weak transcription	Pancreas	Pancrea
30	chr10:99303400-99304000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:99303400-99304000	Enhancers	Brain Substantia Nigra	brain
32	chr10:99303400-99304200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:99303400-99304200	Enhancers	NHDF-Ad	bronchial
34	chr10:99303400-99304200	Enhancers	NHLF	lung
35	chr10:99303400-99304400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:99303400-99304400	Enhancers	NHEK	skin
37	chr10:99303400-99304800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:99303400-99305200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:99303400-99306800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:99303400-99307800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:99303400-99308000	Enhancers	HUVEC	blood vessel
42	chr10:99303400-99308800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:99303400-99309600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:99303600-99304000	Enhancers	HSMM	muscle
45	chr10:99303600-99304200	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr10:99303600-99304400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr10:99303600-99304400	Enhancers	NH-A	brain
48	chr10:99303600-99305800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr10:99303600-99306400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:99303600-99306800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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