Variant report

Variant	rs12418097
Chromosome Location	chr11:10483286-10483287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10476262..10479144-chr11:10482528..10484355,2	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1037998	1.00[CHB][hapmap]
rs11042836	1.00[CHB][hapmap]
rs3741040	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10477800-10489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10478000-10487400	Weak transcription	HMEC	breast
4	chr11:10478200-10485800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:10478400-10483800	Weak transcription	Gastric	stomach
6	chr11:10478400-10484600	Weak transcription	Liver	Liver
7	chr11:10478400-10484800	Weak transcription	Osteobl	bone
8	chr11:10478400-10486000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:10478400-10487200	Weak transcription	Fetal Intestine Large	intestine
10	chr11:10478400-10487400	Weak transcription	Right Ventricle	heart
11	chr11:10478400-10489000	Weak transcription	A549	lung
12	chr11:10478400-10500000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
14	chr11:10478600-10483400	Weak transcription	Colonic Mucosa	Colon
15	chr11:10478800-10493600	Weak transcription	HSMM	muscle
16	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
17	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:10479800-10483600	Weak transcription	Esophagus	oesophagus
19	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:10480600-10485800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:10480800-10485600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:10481000-10483600	Weak transcription	NHLF	lung
23	chr11:10481000-10483800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:10481000-10486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:10481000-10488000	Weak transcription	Fetal Stomach	stomach
26	chr11:10481200-10483400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:10481200-10485800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:10481200-10486400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:10481200-10487600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:10481200-10494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:10481400-10483800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr11:10481400-10484600	Weak transcription	Adipose Nuclei	Adipose
33	chr11:10481400-10486400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:10481400-10487200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:10481400-10488400	Weak transcription	NHDF-Ad	bronchial
36	chr11:10482400-10483600	Genic enhancers	Primary B cells from peripheral blood	blood
37	chr11:10482400-10489000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:10482600-10483400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:10482600-10483400	Genic enhancers	Primary hematopoietic stem cells	blood
40	chr11:10482600-10483400	Enhancers	HSMMtube	muscle
41	chr11:10482600-10484200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:10482600-10484600	Genic enhancers	K562	blood
43	chr11:10482600-10486600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:10482600-10486800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:10482600-10488000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:10482600-10488400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:10482600-10488600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:10482600-10489000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:10482600-10489200	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:10482800-10483400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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