Variant report

Variant	rs1037998
Chromosome Location	chr11:10528521-10528522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10517223..10519962-chr11:10526169..10529025,2	MCF-7	breast:
2	chr11:10527749..10530560-chr11:10562124..10563785,2	MCF-7	breast:
3	chr11:10522129..10523861-chr11:10525994..10530069,4	K562	blood:

Variant related genes	Relation type
ENSG00000110315	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000177112	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10743143	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11042836	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12418097	1.00[CHB][hapmap]
rs1381892	1.00[AMR][1000 genomes]
rs1462942	1.00[AMR][1000 genomes]
rs1545743	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1993820	1.00[AMR][1000 genomes]
rs2403332	1.00[AMR][1000 genomes]
rs3741040	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs4909937	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4909939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4910132	1.00[AMR][1000 genomes]
rs4910138	1.00[AMR][1000 genomes]
rs4910147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4910155	1.00[AMR][1000 genomes]
rs4910159	1.00[AMR][1000 genomes]
rs7103710	1.00[AMR][1000 genomes]
rs7106708	1.00[AMR][1000 genomes]
rs7122978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv972946	chr11:10523147-10534985	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
2	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
5	chr11:10502600-10529000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
7	chr11:10507800-10544800	Weak transcription	Fetal Kidney	kidney
8	chr11:10511000-10529600	Strong transcription	Fetal Thymus	thymus
9	chr11:10511000-10533200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr11:10512800-10531600	Weak transcription	Stomach Mucosa	stomach
11	chr11:10512800-10540400	Weak transcription	Fetal Lung	lung
12	chr11:10512800-10548600	Weak transcription	Right Ventricle	heart
13	chr11:10513000-10531800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:10513200-10538000	Weak transcription	Left Ventricle	heart
15	chr11:10513400-10536000	Weak transcription	A549	lung
16	chr11:10514200-10529600	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:10514600-10531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:10514600-10535600	Weak transcription	HSMM	muscle
19	chr11:10515800-10540600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:10516000-10544000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr11:10517200-10531800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:10520000-10543400	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:10520400-10531600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:10521400-10529000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10522200-10529600	Weak transcription	Fetal Heart	heart
26	chr11:10522200-10531600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:10522200-10531800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:10522200-10541200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:10522400-10532400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:10522400-10535600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:10522400-10537800	Weak transcription	Fetal Intestine Large	intestine
32	chr11:10522400-10540600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr11:10522400-10546200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:10522400-10560800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:10522800-10540600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:10524200-10537800	Weak transcription	Aorta	Aorta
37	chr11:10524600-10536800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:10524600-10540600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr11:10524600-10544800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:10525200-10529200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:10525400-10528800	Strong transcription	Osteobl	bone
42	chr11:10525600-10528600	Strong transcription	Brain Cingulate Gyrus	brain
43	chr11:10525600-10528800	Strong transcription	Brain Hippocampus Middle	brain
44	chr11:10525600-10533200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:10525800-10555600	Strong transcription	Primary B cells from peripheral blood	blood
46	chr11:10526000-10532400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:10526200-10532000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:10526200-10535400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:10526400-10528600	Strong transcription	Brain Anterior Caudate	brain
50	chr11:10526400-10532600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links