Variant report

Variant	rs1381892
Chromosome Location	chr11:10461923-10461924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1037998	1.00[AMR][1000 genomes]
rs10743143	1.00[AMR][1000 genomes]
rs1462942	1.00[AMR][1000 genomes]
rs1545743	1.00[AMR][1000 genomes]
rs1993820	1.00[AMR][1000 genomes]
rs2403332	1.00[AMR][1000 genomes]
rs4909937	1.00[AMR][1000 genomes]
rs4909939	1.00[AMR][1000 genomes]
rs4910132	1.00[AMR][1000 genomes]
rs4910138	1.00[ASW][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4910147	1.00[AMR][1000 genomes]
rs4910155	1.00[AMR][1000 genomes]
rs4910159	1.00[AMR][1000 genomes]
rs7103710	1.00[AMR][1000 genomes]
rs7106708	1.00[AMR][1000 genomes]
rs7122978	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10458600-10463000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:10458800-10463000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:10459000-10463000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:10459400-10465600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:10460200-10462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:10460400-10462400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10460400-10463600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:10460400-10464800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:10460600-10462000	Enhancers	Fetal Muscle Leg	muscle
11	chr11:10461400-10463600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:10461600-10462600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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