Variant report

Variant	rs7103710
Chromosome Location	chr11:10572245-10572246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1037998	1.00[AMR][1000 genomes]
rs10743143	1.00[AMR][1000 genomes]
rs1381892	1.00[AMR][1000 genomes]
rs1462942	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1545743	1.00[AMR][1000 genomes]
rs1993820	1.00[AMR][1000 genomes]
rs2403332	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4909937	1.00[AMR][1000 genomes]
rs4909939	1.00[AMR][1000 genomes]
rs4910132	1.00[AMR][1000 genomes]
rs4910138	1.00[AMR][1000 genomes]
rs4910147	1.00[AMR][1000 genomes]
rs4910155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4910159	1.00[AMR][1000 genomes]
rs7106708	1.00[AMR][1000 genomes]
rs7122978	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10566200-10572800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10571200-10572400	Weak transcription	NHLF	lung
3	chr11:10571800-10573000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:10571800-10573000	Enhancers	Osteobl	bone
5	chr11:10571800-10573200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:10571800-10573200	Enhancers	A549	lung
7	chr11:10571800-10573200	Enhancers	HepG2	liver
8	chr11:10571800-10573400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10572000-10572400	Enhancers	NHEK	skin
10	chr11:10572000-10572600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:10572000-10572600	Enhancers	HSMM	muscle
12	chr11:10572000-10572600	Enhancers	HUVEC	blood vessel
13	chr11:10572000-10572800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:10572000-10573200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:10572000-10573200	Enhancers	Hela-S3	cervix
16	chr11:10572000-10573200	Enhancers	NH-A	brain
17	chr11:10572200-10572600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr11:10572200-10572800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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