Variant report

Variant	nsv972946
Chromosome Location	chr11:10523147-10534985
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:240)
CpG islands
(count:610)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 1)
miRNA target
sites (count:6)

(count:240 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr11:10529366-10531910	GM12878	blood:	n/a	n/a
2	BATF	chr11:10529276-10531911	GM12878	blood:	n/a	n/a
3	BCL11A	chr11:10529372-10531895	GM12878	blood:	n/a	n/a
4	BCL11A	chr11:10529354-10531922	GM12878	blood:	n/a	n/a
5	BHLHE40	chr11:10529352-10531914	HepG2	liver:	n/a	n/a
6	CEBPB	chr11:10529376-10529537	K562	blood:	n/a	n/a
7	CEBPB	chr11:10530682-10531381	K562	blood:	n/a	n/a
8	CEBPB	chr11:10533356-10533651	IMR90	lung:	n/a	chr11:10533498-10533509
9	CEBPB	chr11:10533364-10533647	A549	lung:	n/a	chr11:10533498-10533509
10	CEBPB	chr11:10530661-10531372	GM12878	blood:	n/a	n/a
11	CEBPB	chr11:10530695-10531369	K562	blood:	n/a	n/a
12	CEBPB	chr11:10533344-10533628	HepG2	liver:	n/a	chr11:10533498-10533509
13	CEBPB	chr11:10533358-10533630	K562	blood:	n/a	chr11:10533498-10533509
14	CEBPD	chr11:10529257-10531941	K562	blood:	n/a	n/a
15	CTCF	chr11:10531210-10531217	GM10266	blood:	n/a	n/a
16	CTCF	chr11:10531164-10531257	GM13977	blood:	n/a	n/a
17	CTCF	chr11:10531161-10531208	GM10266	blood:	n/a	n/a
18	CTCF	chr11:10530368-10530674	K562	blood:	n/a	n/a
19	CTCF	chr11:10531659-10531802	K562	blood:	n/a	n/a
20	CTCF	chr11:10531416-10531575	K562	blood:	n/a	n/a
21	CTCF	chr11:10532740-10532890	HCPEpiC	choroid plexus:	n/a	n/a
22	CTCF	chr11:10532720-10532870	WERI-Rb-1	eye:	n/a	n/a
23	CTCF	chr11:10531056-10531228	Medullo	brain:	n/a	n/a
24	CTCF	chr11:10530860-10531010	BE2_C	brain:	n/a	n/a
25	CTCF	chr11:10530722-10530790	A549	lung:	n/a	n/a
26	CTCF	chr11:10531170-10531233	GM10248	blood:	n/a	n/a
27	CTCF	chr11:10529341-10529629	K562	blood:	n/a	n/a
28	CTCF	chr11:10531412-10531623	K562	blood:	n/a	n/a
29	CTCF	chr11:10531165-10531215	GM13976	blood:	n/a	n/a
30	CTCF	chr11:10530703-10530794	Gliobla	brain:	n/a	n/a
31	CTCF	chr11:10530400-10530598	K562	blood:	n/a	n/a
32	CTCF	chr11:10529631-10530355	K562	blood:	n/a	n/a
33	CTCF	chr11:10530683-10531383	K562	blood:	n/a	n/a
34	CTCF	chr11:10532680-10532830	HCPEpiC	choroid plexus:	n/a	n/a
35	CTCF	chr11:10530997-10531085	Gliobla	brain:	n/a	n/a
36	CTCF	chr11:10530691-10531312	K562	blood:	n/a	n/a
37	CTCF	chr11:10529297-10529559	K562	blood:	n/a	n/a
38	EBF1	chr11:10529365-10531811	GM12878	blood:	n/a	chr11:10529471-10529480
39	EBF1	chr11:10529370-10531908	GM12878	blood:	n/a	chr11:10529471-10529480
40	EP300	chr11:10531657-10531851	GM12878	blood:	n/a	n/a
41	EP300	chr11:10531399-10531596	GM12878	blood:	n/a	n/a
42	EP300	chr11:10529378-10531372	GM12878	blood:	n/a	n/a
43	EP300	chr11:10529350-10531933	GM12878	blood:	n/a	n/a
44	ESRRA	chr11:10534330-10535010	GM12878	blood:	n/a	n/a
45	FOS	chr11:10531660-10531714	MCF10A-Er-Src	breast:	n/a	chr11:10531679-10531691 chr11:10531680-10531690 chr11:10531680-10531690 chr11:10531682-10531693 chr11:10531680-10531690 chr11:10531680-10531689 chr11:10531680-10531690
46	FOS	chr11:10531675-10531704	MCF10A-Er-Src	breast:	n/a	chr11:10531679-10531691 chr11:10531680-10531690 chr11:10531680-10531690 chr11:10531682-10531693 chr11:10531680-10531690 chr11:10531680-10531689 chr11:10531680-10531690
47	FOS	chr11:10531660-10531708	MCF10A-Er-Src	breast:	n/a	chr11:10531679-10531691 chr11:10531680-10531690 chr11:10531680-10531690 chr11:10531682-10531693 chr11:10531680-10531690 chr11:10531680-10531689 chr11:10531680-10531690
48	FOS	chr11:10526964-10527536	HUVEC	blood vessel:	n/a	chr11:10527169-10527180
49	FOS	chr11:10527563-10527807	MCF10A-Er-Src	breast:	n/a	n/a
50	FOS	chr11:10527556-10527819	MCF10A-Er-Src	breast:	n/a	n/a

(count:610 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:10531091-10531141	MCF10A-Er-Src	breast:	n/a
2	chr11:10531091-10531141	HCT-116	colon:	n/a
3	chr11:10530636-10530686	ovcar-3	ovarian:	n/a
4	chr11:10531091-10531141	NH-A	brain:	n/a
5	chr11:10531596-10531646	U87	brain:	n/a
6	chr11:10527506-10527556	NHBE	bronchial:	n/a
7	chr11:10531496-10531546	SAEC	small airway:	n/a
8	chr11:10531091-10531141	SAEC	small airway:	n/a
9	chr11:10529706-10529756	NB4	blood:	n/a
10	chr11:10534506-10534556	MCF10A-Er-Src	breast:	n/a
11	chr11:10529596-10529646	MCF-7	breast:	n/a
12	chr11:10531496-10531546	SK-N-SH_RA	brain:	n/a
13	chr11:10530636-10530686	HIPEpiC	eye:	n/a
14	chr11:10534506-10534556	NB4	blood:	n/a
15	chr11:10531596-10531646	HIPEpiC	eye:	n/a
16	chr11:10530636-10530686	ProgFib	skin:	n/a
17	chr11:10529587-10529637	ProgFib	skin:	n/a
18	chr11:10531091-10531141	NHBE	bronchial:	n/a
19	chr11:10529596-10529646	AoSMC	blood vessel:	n/a
20	chr11:10529706-10529756	BJ	skin:	n/a
21	chr11:10531091-10531141	GM19239	blood:	n/a
22	chr11:10527506-10527556	NB4	blood:	n/a
23	chr11:10531496-10531546	Hela-S3	cervix:	n/a
24	chr11:10531091-10531141	HRCEpiC	kidney:	n/a
25	chr11:10531596-10531646	HPAEpiC	pulmonary alveolar:	n/a
26	chr11:10527506-10527556	RPTEC	kidney:	n/a
27	chr11:10527506-10527556	IMR90	lung:	fetal
28	chr11:10529706-10529756	HIPEpiC	eye:	n/a
29	chr11:10531596-10531646	Hela-S3	cervix:	n/a
30	chr11:10531496-10531546	HNPCEpiC	eye:	n/a
31	chr11:10529587-10529637	GM12892	blood:	n/a
32	chr11:10531665-10531715	GM19239	blood:	n/a
33	chr11:10530636-10530686	BE2_C	brain:	n/a
34	chr11:10529596-10529646	NH-A	brain:	n/a
35	chr11:10531496-10531546	AG04449	skin:	fetal
36	chr11:10531091-10531141	GM12891	blood:	n/a
37	chr11:10529596-10529646	HCPEpiC	choroid plexus:	n/a
38	chr11:10531596-10531646	NHBE	bronchial:	n/a
39	chr11:10530636-10530686	SKMC	muscle:	n/a
40	chr11:10531496-10531546	NH-A	brain:	n/a
41	chr11:10534506-10534556	ECC-1	luminal epithelium:	n/a
42	chr11:10527506-10527556	K562	blood:	n/a
43	chr11:10530636-10530686	HRE	kidney:	n/a
44	chr11:10531496-10531546	BJ	skin:	n/a
45	chr11:10534506-10534556	GM12878	blood:	n/a
46	chr11:10534506-10534556	AG04450	lung:	fetal
47	chr11:10529596-10529646	HCT-116	colon:	n/a
48	chr11:10531665-10531715	MCF-7	breast:	n/a
49	chr11:10531091-10531141	BE2_C	brain:	n/a
50	chr11:10531091-10531141	IMR90	lung:	fetal

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10534042..10535923-chr11:10675097..10677538,2	MCF-7	breast:
2	chr11:10532333..10535020-chr11:10535560..10538529,2	K562	blood:
3	chr11:10522129..10523861-chr11:10525994..10530069,4	K562	blood:
4	chr11:10526046..10528232-chr11:10533609..10536011,2	K562	blood:
5	chr11:10517223..10519962-chr11:10526169..10529025,2	MCF-7	breast:
6	chr11:10526046..10528232-chr11:10533609..10536011,2	K562	blood:
7	chr11:10521947..10523857-chr11:10526425..10528003,2	K562	blood:
8	chr11:10521947..10523857-chr11:10526425..10528003,2	K562	blood:
9	chr11:10534555..10537040-chr11:10542558..10544660,2	K562	blood:
10	chr11:10527749..10530560-chr11:10562124..10563785,2	MCF-7	breast:
11	chr11:10522129..10523861-chr11:10525994..10530069,4	K562	blood:
12	chr11:10533091..10536044-chr11:10536842..10539445,2	K562	blood:
13	chr11:10514613..10516462-chr11:10525360..10527624,2	K562	blood:

No data

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4485	chr11:10529824-10529843	MIMAT0019019

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	RNF141	hsa-miR-32-5p	chr11:10533499-10533521
2	RNF141	hsa-miR-215-5p	chr11:10533836-10533855
3	RNF141	hsa-miR-124-3p	chr11:10533691-10533710
4	RNF141	hsa-miR-32-5p	chr11:10533505-10533498
5	RNF141	hsa-miR-192-5p	chr11:10533836-10533855
6	RNF141	hsa-miR-124-3p	chr11:10533697-10533691

Variant related genes	Relation type
MTRNR2L8	TF binding region
MTRNR2L8	CpG island
ENSG00000177112	chromatin interactions
ENSG00000110315	chromatin interactions
ENSG00000133805	chromatin interactions

Extended variants
information (count: 530 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:530 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149269999	chr11:10523154-10523155	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs201854837	chr11:10523159-10523160	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs372134510	chr11:10523162-10523163	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs201299838	chr11:10523176-10523177	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs12421214	chr11:10523224-10523225	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs367750414	chr11:10523231-10523232	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs146225184	chr11:10523293-10523294	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs185539981	chr11:10523473-10523474	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs7932321	chr11:10523476-10523477	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs190445055	chr11:10523480-10523481	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs72859126	chr11:10523501-10523502	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs548789500	chr11:10523518-10523519	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs2071018	chr11:10523519-10523520	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs139287574	chr11:10523522-10523523	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs118025635	chr11:10523626-10523627	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs144111371	chr11:10523659-10523660	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs146021607	chr11:10523672-10523673	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs370668539	chr11:10523673-10523674	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs148694639	chr11:10523689-10523690	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs371440286	chr11:10523692-10523693	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs573121824	chr11:10523802-10523803	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs367675746	chr11:10523808-10523809	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs555577178	chr11:10523912-10523913	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs571359004	chr11:10523936-10523937	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs142252110	chr11:10523945-10523946	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs543515156	chr11:10523974-10523975	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs77910975	chr11:10523989-10523990	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs532384850	chr11:10524041-10524042	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs545827963	chr11:10524062-10524063	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs12293113	chr11:10524070-10524071	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs151248963	chr11:10524079-10524080	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs528824389	chr11:10524084-10524085	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs533913575	chr11:10524110-10524111	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs546022282	chr11:10524131-10524132	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs568645556	chr11:10524157-10524158	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs530595294	chr11:10524168-10524169	Weak transcription Genic enhancers Strong transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs199907307	chr11:10524248-10524249	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
38	rs368314315	chr11:10524251-10524252	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
39	rs377498209	chr11:10524252-10524253	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
40	rs371271160	chr11:10524273-10524274	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
41	rs200359931	chr11:10524305-10524306	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
42	rs374699886	chr11:10524310-10524311	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
43	rs202212138	chr11:10524317-10524318	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
44	rs564822916	chr11:10524327-10524328	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
45	rs142638731	chr11:10524333-10524334	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
46	rs182990148	chr11:10524348-10524349	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	Overlapped CNVs	n/a
47	rs145440011	chr11:10524511-10524512	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs112458923	chr11:10524526-10524527	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs147703062	chr11:10524568-10524569	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs10840431	chr11:10524606-10524607	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:63)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Neuroblastoma	18923524	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:452 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10495000-10528000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:10495200-10530800	Strong transcription	Primary T cells from cord blood	blood
3	chr11:10495800-10529800	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:10496400-10524000	Strong transcription	Primary hematopoietic stem cells	blood
5	chr11:10496600-10529000	Strong transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:10499800-10523600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:10501600-10550600	Weak transcription	Small Intestine	intestine
8	chr11:10502600-10529000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:10502600-10560800	Weak transcription	Fetal Brain Male	brain
10	chr11:10507800-10544800	Weak transcription	Fetal Kidney	kidney
11	chr11:10510400-10524800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:10510400-10528200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:10510600-10527800	Strong transcription	Thymus	Thymus
14	chr11:10510800-10528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:10511000-10529600	Strong transcription	Fetal Thymus	thymus
16	chr11:10511000-10533200	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:10512400-10526200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:10512400-10526800	Strong transcription	NHEK	skin
19	chr11:10512600-10523800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr11:10512600-10523800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:10512600-10525400	Weak transcription	GM12878-XiMat	blood
22	chr11:10512800-10526800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:10512800-10531600	Weak transcription	Stomach Mucosa	stomach
24	chr11:10512800-10540400	Weak transcription	Fetal Lung	lung
25	chr11:10512800-10548600	Weak transcription	Right Ventricle	heart
26	chr11:10513000-10525200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:10513000-10526800	Weak transcription	HMEC	breast
28	chr11:10513000-10531800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:10513200-10526000	Weak transcription	Psoas Muscle	Psoas
30	chr11:10513200-10527600	Weak transcription	Right Atrium	heart
31	chr11:10513200-10538000	Weak transcription	Left Ventricle	heart
32	chr11:10513400-10536000	Weak transcription	A549	lung
33	chr11:10513800-10528200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:10514000-10527200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:10514200-10524000	Weak transcription	NHDF-Ad	bronchial
36	chr11:10514200-10525000	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr11:10514200-10529600	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:10514400-10524200	Strong transcription	Gastric	stomach
39	chr11:10514400-10524600	Strong transcription	Brain Inferior Temporal Lobe	brain
40	chr11:10514400-10525200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:10514400-10526000	Strong transcription	Brain Anterior Caudate	brain
42	chr11:10514600-10524400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:10514600-10524600	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:10514600-10531400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:10514600-10535600	Weak transcription	HSMM	muscle
46	chr11:10514800-10524600	Strong transcription	Lung	lung
47	chr11:10514800-10528200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:10515000-10527000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:10515000-10528200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:10515400-10523800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links