Variant report

Variant	rs1242023
Chromosome Location	chr14:24672221-24672222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24672183-24678010	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24672087-24672748	HepG2	liver:	n/a	n/a
3	POLR2A	chr14:24670468-24672833	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr14:24672068-24672522	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr14:24672150-24672761	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24671039..24673940-chr14:24674000..24676958,4	K562	blood:
2	chr14:24656588..24659122-chr14:24669453..24672257,2	MCF-7	breast:

Variant related genes	Relation type
TSSK4	TF binding region
ENSG00000196497	Chromatin interaction
ENSG00000139908	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12588742	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588782	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589157	0.81[ASN][1000 genomes]
rs17184526	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2234095	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2234096	0.92[ASN][1000 genomes]
rs2295318	0.80[ASN][1000 genomes]
rs2295319	0.80[ASN][1000 genomes]
rs55949103	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59033623	0.80[ASN][1000 genomes]
rs72694306	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72694311	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72694312	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8007272	0.80[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24665600-24674800	Weak transcription	Esophagus	oesophagus
2	chr14:24665800-24675000	Weak transcription	Aorta	Aorta
3	chr14:24665800-24681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:24666000-24674200	Weak transcription	Gastric	stomach
5	chr14:24666000-24674800	Weak transcription	Ovary	ovary
6	chr14:24666000-24675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:24666000-24675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:24666200-24673200	Weak transcription	Psoas Muscle	Psoas
9	chr14:24666600-24674200	Weak transcription	NHDF-Ad	bronchial
10	chr14:24666600-24675000	Weak transcription	Brain Germinal Matrix	brain
11	chr14:24666600-24675000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:24666600-24675000	Weak transcription	Right Ventricle	heart
13	chr14:24666600-24675000	Weak transcription	NH-A	brain
14	chr14:24666600-24675200	Weak transcription	HUVEC	blood vessel
15	chr14:24666600-24676000	Weak transcription	Stomach Mucosa	stomach
16	chr14:24666600-24676600	Weak transcription	Small Intestine	intestine
17	chr14:24666600-24678600	Weak transcription	Hela-S3	cervix
18	chr14:24666600-24679000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:24666600-24682200	Weak transcription	Fetal Heart	heart
20	chr14:24666800-24672800	Strong transcription	Fetal Stomach	stomach
21	chr14:24667000-24675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:24667200-24675200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr14:24668000-24680600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:24668200-24674800	Weak transcription	Colonic Mucosa	Colon
25	chr14:24668400-24672400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:24668400-24672600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:24668400-24673600	Weak transcription	Fetal Brain Male	brain
28	chr14:24668600-24673800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr14:24668600-24674200	Weak transcription	K562	blood
30	chr14:24668600-24674800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:24668600-24674800	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:24668600-24674800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr14:24668600-24675400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:24668600-24675400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:24668600-24675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:24668600-24676800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:24668600-24681000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr14:24668600-24681000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:24668800-24675000	Weak transcription	Pancreas	Pancrea
40	chr14:24669200-24675000	Weak transcription	NHEK	skin
41	chr14:24670200-24673800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr14:24670200-24680000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:24670400-24672400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:24670400-24672600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:24670400-24672600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:24670400-24673000	Strong transcription	Lung	lung
47	chr14:24670400-24680200	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr14:24670400-24680800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr14:24670600-24672400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:24670600-24672600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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