Variant report

Variant	rs2295318
Chromosome Location	chr14:24683125-24683126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:119)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:119 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr14:24682092-24683132	MCF-7	breast:	n/a	n/a
2	TAF1	chr14:24682055-24683147	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr14:24682089-24683223	HL-60	blood:	n/a	n/a
4	USF1	chr14:24682524-24683199	SK-N-SH	brain:	n/a	chr14:24682568-24682584 chr14:24682800-24682811 chr14:24682526-24682542
5	SP1	chr14:24682096-24683202	HCT-116	colon:	n/a	chr14:24682339-24682349 chr14:24682339-24682349
6	USF1	chr14:24682400-24683190	A549	lung:	n/a	chr14:24682568-24682584 chr14:24682800-24682811 chr14:24682526-24682542
7	ELF1	chr14:24682125-24683132	SK-N-SH	brain:	n/a	n/a
8	MYBL2	chr14:24681937-24683555	HepG2	liver:	n/a	n/a
9	POLR2A	chr14:24682095-24683160	HL-60	blood:	n/a	n/a
10	IRF1	chr14:24682208-24683265	K562	blood:	n/a	chr14:24682509-24682518
11	POLR2A	chr14:24682053-24683165	Raji	blood:	n/a	n/a
12	MAZ	chr14:24682252-24683196	HepG2	liver:	n/a	n/a
13	NFIC	chr14:24682069-24683813	HepG2	liver:	n/a	n/a
14	WRNIP1	chr14:24682167-24683181	GM12878	blood:	n/a	n/a
15	USF1	chr14:24682467-24683239	H1-hESC	embryonic stem cell:	n/a	chr14:24682568-24682584 chr14:24682800-24682811 chr14:24682526-24682542
16	POLR2A	chr14:24682035-24683194	IMR90	lung:	n/a	n/a
17	MAX	chr14:24682071-24683133	K562	blood:	n/a	n/a
18	ATF2	chr14:24682601-24683316	H1-hESC	embryonic stem cell:	n/a	n/a
19	ELF1	chr14:24682142-24683151	HCT-116	colon:	n/a	n/a
20	NFATC1	chr14:24682124-24683147	GM12878	blood:	n/a	n/a
21	USF1	chr14:24682299-24683228	SK-N-SH	brain:	n/a	chr14:24682568-24682584 chr14:24682800-24682811 chr14:24682526-24682542
22	MYBL2	chr14:24682030-24683968	HepG2	liver:	n/a	n/a
23	USF2	chr14:24682231-24683508	Hela-S3	cervix:	n/a	chr14:24682568-24682584 chr14:24682526-24682542 chr14:24682800-24682811
24	POLR2A	chr14:24682092-24683128	HepG2	liver:	n/a	n/a
25	POLR2A	chr14:24682096-24683136	K562	blood:	n/a	n/a
26	POLR2A	chr14:24681905-24683153	U87	brain:	n/a	n/a
27	MAX	chr14:24682082-24683221	A549	lung:	n/a	n/a
28	USF2	chr14:24682432-24683172	H1-hESC	embryonic stem cell:	n/a	chr14:24682568-24682584 chr14:24682526-24682542 chr14:24682800-24682811
29	POLR2A	chr14:24681945-24683196	HUVEC	blood vessel:	n/a	n/a
30	POLR2A	chr14:24682055-24683413	H1-hESC	embryonic stem cell:	n/a	n/a
31	MBD4	chr14:24682041-24683539	HepG2	liver:	n/a	n/a
32	MAFK	chr14:24682202-24683599	K562	blood:	n/a	chr14:24683517-24683532
33	MAX	chr14:24682141-24683176	ECC-1	luminal epithelium:	n/a	n/a
34	MAX	chr14:24682053-24683176	MCF-7	breast:	n/a	n/a
35	CREB1	chr14:24682079-24683177	GM12878	blood:	n/a	n/a
36	HEY1	chr14:24682051-24683403	HepG2	liver:	n/a	n/a
37	CEBPB	chr14:24682000-24683180	GM12878	blood:	n/a	n/a
38	CREB1	chr14:24682082-24683911	HepG2	liver:	n/a	n/a
39	ARID3A	chr14:24682452-24683206	HepG2	liver:	n/a	n/a
40	POLR2A	chr14:24682035-24683129	GM12891	blood:	n/a	n/a
41	HCFC1	chr14:24682068-24683655	Hela-S3	cervix:	n/a	n/a
42	CREB1	chr14:24682109-24683225	GM12878	blood:	n/a	n/a
43	FOSL2	chr14:24682043-24683282	A549	lung:	n/a	n/a
44	POLR2A	chr14:24682045-24683388	GM12878	blood:	n/a	n/a
45	MAX	chr14:24682092-24683201	MCF-7	breast:	n/a	n/a
46	POLR2A	chr14:24682055-24683133	K562	blood:	n/a	n/a
47	POLR2A	chr14:24682030-24683161	GM12891	blood:	n/a	n/a
48	ATF3	chr14:24682317-24683446	HepG2	liver:	n/a	n/a
49	ZBTB33	chr14:24682177-24683131	A549	lung:	n/a	n/a
50	MBD4	chr14:24682063-24683778	HepG2	liver:	n/a	n/a

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24614698..24618732-chr14:24681293..24686635,9	MCF-7	breast:
2	chr14:24681838..24686459-chr14:24698203..24703209,7	K562	blood:
3	chr14:24681489..24683896-chr22:29136971..29139325,2	MCF-7	breast:
4	chr14:24657069..24662255-chr14:24679017..24683823,7	K562	blood:
5	chr14:24657069..24659757-chr14:24681163..24683823,2	K562	blood:
6	chr14:24562256..24566141-chr14:24679709..24684040,4	MCF-7	breast:
7	chr14:24627288..24629695-chr14:24682917..24684693,2	K562	blood:
8	chr14:24680927..24686311-chr14:24766466..24771455,6	K562	blood:
9	chr14:24682248..24683216-chr6:27777393..27778163,2	NB4	blood:
10	chr14:24682923..24685133-chr14:24776691..24778395,2	MCF-7	breast:
11	chr14:24682906..24687740-chr14:24707883..24712855,6	K562	blood:
12	chr14:24644916..24647133-chr14:24681211..24683281,2	MCF-7	breast:
13	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
14	chr14:24582139..24585680-chr14:24681172..24684966,4	K562	blood:
15	chr14:24682382..24684800-chr14:24800505..24802328,2	K562	blood:
16	chr14:24680938..24683854-chr14:24736234..24738459,2	K562	blood:
17	chr14:24681602..24685045-chr14:24898549..24902277,4	MCF-7	breast:
18	chr14:24608866..24610755-chr14:24681114..24684449,4	MCF-7	breast:
19	chr14:24680755..24686632-chr14:24737203..24743863,8	MCF-7	breast:
20	chr14:24562071..24566026-chr14:24681194..24683838,4	K562	blood:
21	chr14:24682270..24687913-chr14:24764870..24771791,12	MCF-7	breast:
22	chr14:24682724..24684618-chr16:2203699..2206163,2	MCF-7	breast:
23	chr14:24608723..24612009-chr14:24681529..24684015,3	K562	blood:
24	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
25	chr14:24627382..24636644-chr14:24680297..24686914,11	MCF-7	breast:
26	chr14:24682802..24685207-chr14:24711355..24714494,4	K562	blood:
27	chr14:24663072..24666624-chr14:24679241..24683731,7	K562	blood:
28	chr14:24581643..24583639-chr14:24682241..24684966,3	K562	blood:
29	chr14:24647373..24649581-chr14:24682421..24684138,2	MCF-7	breast:
30	chr14:24618673..24621227-chr14:24682825..24685142,2	K562	blood:
31	chr14:24582823..24585383-chr14:24679580..24684086,4	MCF-7	breast:
32	chr14:24682332..24685366-chr14:24686250..24689239,4	K562	blood:
33	chr14:24682408..24683240-chr14:24701149..24701695,2	MCF-7	breast:
34	chr14:24562071..24566278-chr14:24680757..24683932,6	K562	blood:
35	chr14:24681591..24684402-chr14:24776273..24778851,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSSK4-1	chr14:24681707-24683202	NONHSAT036011

No data

Variant related genes	Relation type
CHMP4A	TF binding region
TM9SF1	TF binding region
ENSG00000254692	TF binding region
ENSG00000092098	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000100926	Chromatin interaction
ENSG00000259522	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000199804	Chromatin interaction
ENSG00000260260	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000183765	Chromatin interaction
ENSG00000272658	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000131653	Chromatin interaction
ENSG00000259529	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000100918	Chromatin interaction
ENSG00000213928	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000100209	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000157379	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10144791	1.00[MEX][hapmap]
rs10146665	1.00[MEX][hapmap]
rs1242023	0.80[ASN][1000 genomes]
rs12588742	0.84[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs12589157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17184526	0.87[CHB][hapmap];0.88[CHD][hapmap]
rs2234095	0.81[CHB][hapmap]
rs2234096	0.91[JPT][hapmap]
rs2295319	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55949103	0.80[ASN][1000 genomes]
rs59033623	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72694311	0.82[ASN][1000 genomes]
rs72694312	0.82[ASN][1000 genomes]
rs8007272	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24681600-24683200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:24681600-24683200	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr14:24681800-24683200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:24681800-24683200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:24681800-24683200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:24681800-24683200	Active TSS	Psoas Muscle	Psoas
7	chr14:24681800-24683200	Active TSS	Right Ventricle	heart
8	chr14:24681800-24683600	Active TSS	H1 Cell Line	embryonic stem cell
9	chr14:24682000-24683200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:24682000-24683800	Active TSS	Brain Germinal Matrix	brain
11	chr14:24682200-24683200	Active TSS	Spleen	Spleen
12	chr14:24682600-24683200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr14:24682600-24683200	Flanking Active TSS	Stomach Smooth Muscle	stomach
14	chr14:24682600-24683400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:24682600-24684600	Weak transcription	Aorta	Aorta
16	chr14:24682800-24683200	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:24682800-24683200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:24682800-24683200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
19	chr14:24682800-24683200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:24682800-24683200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:24682800-24683200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:24682800-24683200	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr14:24682800-24683200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
24	chr14:24682800-24683200	Flanking Active TSS	Primary hematopoietic stem cells	blood
25	chr14:24682800-24683200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr14:24682800-24683200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr14:24682800-24683200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr14:24682800-24683200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
29	chr14:24682800-24683200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr14:24682800-24683200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:24682800-24683200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:24682800-24683200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr14:24682800-24683200	Flanking Active TSS	Brain Angular Gyrus	brain
34	chr14:24682800-24683200	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr14:24682800-24683200	Flanking Active TSS	Brain Cingulate Gyrus	brain
36	chr14:24682800-24683200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:24682800-24683200	Flanking Active TSS	Colonic Mucosa	Colon
38	chr14:24682800-24683200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr14:24682800-24683200	Flanking Active TSS	Fetal Brain Male	brain
40	chr14:24682800-24683200	Flanking Active TSS	Fetal Brain Female	brain
41	chr14:24682800-24683200	Flanking Active TSS	Fetal Heart	heart
42	chr14:24682800-24683200	Flanking Active TSS	Fetal Intestine Large	intestine
43	chr14:24682800-24683200	Flanking Active TSS	Fetal Intestine Small	intestine
44	chr14:24682800-24683200	Transcr. at gene 5' and 3'	Fetal Kidney	kidney
45	chr14:24682800-24683200	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr14:24682800-24683200	Flanking Active TSS	Fetal Stomach	stomach
47	chr14:24682800-24683200	Flanking Active TSS	Fetal Thymus	thymus
48	chr14:24682800-24683200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
49	chr14:24682800-24683200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr14:24682800-24683200	Flanking Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links