Variant report

Variant	rs10144791
Chromosome Location	chr14:24681134-24681135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24680636-24681227	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr14:24680410-24681174	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr14:24680409-24681262	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr14:24680563-24681171	K562	blood:	n/a	n/a
5	POLR2A	chr14:24680330-24681926	HepG2	liver:	n/a	n/a
6	HEY1	chr14:24680352-24681236	HepG2	liver:	n/a	n/a
7	POLR2A	chr14:24680890-24681931	GM12878	blood:	n/a	n/a
8	POLR2A	chr14:24680400-24683184	GM12892	blood:	n/a	n/a
9	POLR2A	chr14:24681013-24681305	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr14:24680418-24681996	GM12892	blood:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24614107..24617488-chr14:24678980..24682276,4	K562	blood:
2	chr14:24657069..24662255-chr14:24679017..24683823,7	K562	blood:
3	chr14:24562256..24566141-chr14:24679709..24684040,4	MCF-7	breast:
4	chr14:24680927..24686311-chr14:24766466..24771455,6	K562	blood:
5	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
6	chr14:24680938..24683854-chr14:24736234..24738459,2	K562	blood:
7	chr14:24608866..24610755-chr14:24681114..24684449,4	MCF-7	breast:
8	chr14:24680755..24686632-chr14:24737203..24743863,8	MCF-7	breast:
9	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
10	chr14:24627382..24636644-chr14:24680297..24686914,11	MCF-7	breast:
11	chr14:24663072..24666624-chr14:24679241..24683731,7	K562	blood:
12	chr14:24647886..24650156-chr14:24680115..24682418,2	MCF-7	breast:
13	chr14:24614984..24617488-chr14:24679920..24681557,2	K562	blood:
14	chr14:24681085..24682828-chr14:24772928..24775361,2	MCF-7	breast:
15	chr14:24679583..24682789-chr14:24759113..24762719,3	K562	blood:
16	chr14:24582823..24585383-chr14:24679580..24684086,4	MCF-7	breast:
17	chr14:24562071..24566278-chr14:24680757..24683932,6	K562	blood:

No data

Variant related genes	Relation type
CHMP4A	TF binding region
ENSG00000196943	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000213928	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000199804	Chromatin interaction
ENSG00000100918	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000100926	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000259522	Chromatin interaction
ENSG00000100897	Chromatin interaction
ENSG00000157379	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10131288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132189	1.00[ASN][1000 genomes]
rs10136993	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140260	1.00[ASN][1000 genomes]
rs10142080	1.00[ASN][1000 genomes]
rs10142310	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10143943	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146665	1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17101758	1.00[ASN][1000 genomes]
rs2295318	1.00[MEX][hapmap]
rs2295319	0.89[LWK][hapmap];1.00[MEX][hapmap]
rs28396996	1.00[ASN][1000 genomes]
rs28435365	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs28636804	1.00[ASN][1000 genomes]
rs4470080	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7151467	1.00[ASN][1000 genomes]
rs8005722	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008047	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011199	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24665800-24681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:24666600-24682200	Weak transcription	Fetal Heart	heart
3	chr14:24670600-24681200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:24670600-24681400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:24671200-24681200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:24672000-24681200	Strong transcription	Duodenum Mucosa	Duodenum
7	chr14:24672200-24681200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:24672200-24681200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr14:24672400-24681200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:24672600-24682000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr14:24673600-24681200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:24673600-24681200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:24673600-24681200	Strong transcription	Fetal Brain Female	brain
14	chr14:24673800-24681200	Strong transcription	A549	lung
15	chr14:24674000-24681600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:24674000-24681800	Weak transcription	Psoas Muscle	Psoas
17	chr14:24674600-24681200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:24674600-24681400	Strong transcription	NHLF	lung
19	chr14:24675000-24681200	Strong transcription	Fetal Lung	lung
20	chr14:24675400-24681200	Strong transcription	HSMM	muscle
21	chr14:24676600-24681200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr14:24676600-24681600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr14:24677400-24682200	Weak transcription	Stomach Mucosa	stomach
24	chr14:24677800-24681400	Strong transcription	K562	blood
25	chr14:24678400-24681200	Strong transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:24678800-24681800	Weak transcription	Right Atrium	heart
27	chr14:24679000-24681200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr14:24679400-24682200	Weak transcription	Small Intestine	intestine
29	chr14:24679800-24681200	Genic enhancers	HepG2	liver
30	chr14:24679800-24681600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:24679800-24682000	Weak transcription	HUVEC	blood vessel
32	chr14:24680000-24682000	Weak transcription	Fetal Kidney	kidney
33	chr14:24680000-24682000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr14:24680000-24682000	Weak transcription	HMEC	breast
35	chr14:24680000-24682000	Weak transcription	HSMMtube	muscle
36	chr14:24680000-24682200	Weak transcription	Gastric	stomach
37	chr14:24680200-24681200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr14:24680200-24681600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:24680200-24681600	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:24680200-24681600	Weak transcription	Pancreas	Pancrea
41	chr14:24680200-24681600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:24680200-24681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr14:24680200-24682000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:24680200-24682000	Weak transcription	Aorta	Aorta
45	chr14:24680200-24682000	Weak transcription	Brain Substantia Nigra	brain
46	chr14:24680200-24682000	Weak transcription	Osteobl	bone
47	chr14:24680400-24681200	Genic enhancers	Primary T cells from cord blood	blood
48	chr14:24680400-24681400	Genic enhancers	Primary B cells from cord blood	blood
49	chr14:24680400-24682000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr14:24680600-24681200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links