Variant report

Variant	rs4470080
Chromosome Location	chr14:24671199-24671200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24670529-24671226	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24670468-24672833	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24671039..24673940-chr14:24674000..24676958,4	K562	blood:
2	chr14:24656588..24659122-chr14:24669453..24672257,2	MCF-7	breast:

Variant related genes	Relation type
TSSK4	TF binding region
ENSG00000139908	Chromatin interaction
ENSG00000196497	Chromatin interaction

rs_ID	r²[population]
rs10131288	1.00[ASN][1000 genomes]
rs10132189	1.00[ASN][1000 genomes]
rs10136993	1.00[ASN][1000 genomes]
rs10140260	1.00[ASN][1000 genomes]
rs10142080	1.00[ASN][1000 genomes]
rs10142310	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10143943	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10144791	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146665	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17101758	1.00[ASN][1000 genomes]
rs28396996	1.00[ASN][1000 genomes]
rs28435365	1.00[ASN][1000 genomes]
rs28533649	1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs28636804	1.00[ASN][1000 genomes]
rs7151467	1.00[ASN][1000 genomes]
rs8005722	1.00[ASN][1000 genomes]
rs8008047	1.00[ASN][1000 genomes]
rs8011199	1.00[ASN][1000 genomes]
rs8012049	1.00[ASN][1000 genomes]
rs8019514	1.00[ASN][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24665600-24674800	Weak transcription	Esophagus	oesophagus
2	chr14:24665800-24675000	Weak transcription	Aorta	Aorta
3	chr14:24665800-24681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:24666000-24672200	Weak transcription	NHLF	lung
5	chr14:24666000-24674200	Weak transcription	Gastric	stomach
6	chr14:24666000-24674800	Weak transcription	Ovary	ovary
7	chr14:24666000-24675000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:24666000-24675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:24666200-24673200	Weak transcription	Psoas Muscle	Psoas
10	chr14:24666600-24672200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:24666600-24672200	Weak transcription	HSMM	muscle
12	chr14:24666600-24672200	Weak transcription	HSMMtube	muscle
13	chr14:24666600-24674200	Weak transcription	NHDF-Ad	bronchial
14	chr14:24666600-24675000	Weak transcription	Brain Germinal Matrix	brain
15	chr14:24666600-24675000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:24666600-24675000	Weak transcription	Right Ventricle	heart
17	chr14:24666600-24675000	Weak transcription	NH-A	brain
18	chr14:24666600-24675200	Weak transcription	HUVEC	blood vessel
19	chr14:24666600-24676000	Weak transcription	Stomach Mucosa	stomach
20	chr14:24666600-24676600	Weak transcription	Small Intestine	intestine
21	chr14:24666600-24678600	Weak transcription	Hela-S3	cervix
22	chr14:24666600-24679000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:24666600-24682200	Weak transcription	Fetal Heart	heart
24	chr14:24666800-24672200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:24666800-24672800	Strong transcription	Fetal Stomach	stomach
26	chr14:24667000-24675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:24667200-24675200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr14:24668000-24680600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:24668200-24672200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:24668200-24674800	Weak transcription	Colonic Mucosa	Colon
31	chr14:24668400-24672200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:24668400-24672400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr14:24668400-24672600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:24668400-24673600	Weak transcription	Fetal Brain Male	brain
35	chr14:24668600-24673800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr14:24668600-24674200	Weak transcription	K562	blood
37	chr14:24668600-24674800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:24668600-24674800	Weak transcription	Colon Smooth Muscle	Colon
39	chr14:24668600-24674800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr14:24668600-24675400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:24668600-24675400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr14:24668600-24675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:24668600-24676800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:24668600-24681000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr14:24668600-24681000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:24668800-24672200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr14:24668800-24675000	Weak transcription	Pancreas	Pancrea
48	chr14:24669200-24675000	Weak transcription	NHEK	skin
49	chr14:24669400-24672000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr14:24669800-24671600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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