Variant report

Variant	rs8012049
Chromosome Location	chr14:24697699-24697700
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24697134-24697931	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24697269-24697948	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24696906..24699761-chr14:24701286..24703983,2	K562	blood:
2	chr14:24656607..24659161-chr14:24696896..24699853,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP4A-1	chr14:24695811-24697918	NONHSAT036025

Variant related genes	Relation type
GMPR2	TF binding region
ENSG00000196497	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000100938	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131288	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132189	1.00[ASN][1000 genomes]
rs10136993	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140260	1.00[ASN][1000 genomes]
rs10142080	1.00[ASN][1000 genomes]
rs10142310	1.00[ASN][1000 genomes]
rs10143943	1.00[ASN][1000 genomes]
rs10144791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146665	1.00[ASN][1000 genomes]
rs17101758	1.00[ASN][1000 genomes]
rs28396996	1.00[ASN][1000 genomes]
rs28435365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533649	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs28636804	1.00[ASN][1000 genomes]
rs4470080	1.00[ASN][1000 genomes]
rs7151467	1.00[ASN][1000 genomes]
rs8005722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008047	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011199	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019514	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24685400-24700000	Weak transcription	Spleen	Spleen
2	chr14:24685400-24700200	Weak transcription	Colonic Mucosa	Colon
3	chr14:24685400-24700200	Weak transcription	Gastric	stomach
4	chr14:24685400-24700400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:24685600-24700200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:24685600-24700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:24685600-24700200	Weak transcription	Esophagus	oesophagus
8	chr14:24685600-24700200	Weak transcription	Psoas Muscle	Psoas
9	chr14:24685600-24700200	Weak transcription	Thymus	Thymus
10	chr14:24685600-24700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:24685600-24700400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:24685600-24700400	Weak transcription	Fetal Kidney	kidney
13	chr14:24685600-24700400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:24685600-24700400	Weak transcription	K562	blood
15	chr14:24685600-24700600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:24685800-24698200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:24685800-24699000	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:24685800-24699000	Weak transcription	Pancreas	Pancrea
19	chr14:24685800-24700000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:24685800-24700000	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:24685800-24700000	Weak transcription	Lung	lung
22	chr14:24685800-24700200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:24685800-24700200	Weak transcription	Brain Anterior Caudate	brain
24	chr14:24685800-24700200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:24685800-24700200	Weak transcription	Brain Germinal Matrix	brain
26	chr14:24685800-24700200	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:24685800-24700200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:24685800-24700200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr14:24685800-24700400	Weak transcription	Brain Angular Gyrus	brain
30	chr14:24686000-24700000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr14:24686000-24700000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:24686000-24700000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:24686200-24700000	Weak transcription	Fetal Brain Male	brain
34	chr14:24686200-24700400	Weak transcription	Stomach Mucosa	stomach
35	chr14:24687600-24700000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr14:24687600-24700200	Weak transcription	Right Ventricle	heart
37	chr14:24687600-24700200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:24687600-24700800	Weak transcription	Aorta	Aorta
39	chr14:24687800-24698000	Weak transcription	Liver	Liver
40	chr14:24687800-24699800	Weak transcription	Primary B cells from cord blood	blood
41	chr14:24687800-24700000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:24687800-24700000	Weak transcription	Brain Substantia Nigra	brain
43	chr14:24687800-24700000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr14:24687800-24700000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr14:24687800-24700000	Weak transcription	Fetal Muscle Leg	muscle
46	chr14:24687800-24700200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr14:24687800-24700200	Weak transcription	Adipose Nuclei	Adipose
48	chr14:24687800-24700200	Weak transcription	Fetal Lung	lung
49	chr14:24687800-24700200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr14:24687800-24700200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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