Variant report

Variant	rs10143943
Chromosome Location	chr14:24665986-24665987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr14:24665319-24666689	GM12878	blood:	n/a	n/a
2	STAT5A	chr14:24664177-24666099	GM12878	blood:	n/a	n/a
3	CREB1	chr14:24663714-24666046	HepG2	liver:	n/a	n/a
4	MXI1	chr14:24664266-24665994	GM12878	blood:	n/a	chr14:24664482-24664497 chr14:24664484-24664499
5	POLR2A	chr14:24664407-24666048	GM12891	blood:	n/a	n/a
6	SPI1	chr14:24665608-24666015	HL-60	blood:	n/a	chr14:24665730-24665739
7	POLR2A	chr14:24664312-24666057	HepG2	liver:	n/a	n/a
8	POLR2A	chr14:24663324-24667470	HepG2	liver:	n/a	n/a
9	MAX	chr14:24664153-24666002	K562	blood:	n/a	chr14:24664488-24664497 chr14:24664484-24664493
10	MYC	chr14:24664485-24665989	NB4	blood:	n/a	chr14:24664488-24664497
11	RELA	chr14:24664431-24666073	GM10847	blood:	n/a	n/a
12	NFATC1	chr14:24664365-24666099	GM12878	blood:	n/a	chr14:24664484-24664497
13	FOXM1	chr14:24665273-24666036	GM12878	blood:	n/a	n/a
14	POLR2A	chr14:24664273-24666005	HL-60	blood:	n/a	n/a
15	ELF1	chr14:24664320-24666002	HepG2	liver:	n/a	chr14:24664901-24664914
16	HCFC1	chr14:24663864-24666214	Hela-S3	cervix:	n/a	n/a
17	HEY1	chr14:24664362-24666086	HepG2	liver:	n/a	chr14:24664638-24664653
18	MTA3	chr14:24664896-24666106	GM12878	blood:	n/a	n/a
19	POLR2A	chr14:24664303-24666094	GM12878	blood:	n/a	n/a
20	RCOR1	chr14:24665811-24665987	GM12878	blood:	n/a	n/a
21	HNF4G	chr14:24665442-24666063	HepG2	liver:	n/a	chr14:24665522-24665534 chr14:24665522-24665534 chr14:24665747-24665760 chr14:24665747-24665760 chr14:24665521-24665535
22	POLR2A	chr14:24664035-24666047	HL-60	blood:	n/a	n/a
23	CHD1	chr14:24664599-24666024	GM12878	blood:	n/a	n/a
24	POLR2A	chr14:24664428-24666168	GM12878	blood:	n/a	n/a
25	SPI1	chr14:24665515-24666017	HL-60	blood:	n/a	chr14:24665730-24665739
26	EP300	chr14:24665716-24666010	GM12878	blood:	n/a	n/a
27	REST	chr14:24664387-24665991	HL-60	blood:	n/a	chr14:24664975-24664988 chr14:24665151-24665160 chr14:24664792-24664805
28	POLR2A	chr14:24664399-24666022	GM12878	blood:	n/a	n/a
29	POLR2A	chr14:24665660-24666075	GM12892	blood:	n/a	n/a
30	NFATC1	chr14:24665221-24666002	GM12878	blood:	n/a	n/a
31	NFIC	chr14:24664240-24666015	HepG2	liver:	n/a	n/a
32	NFIC	chr14:24663885-24666047	HepG2	liver:	n/a	n/a
33	MBD4	chr14:24663109-24666018	HepG2	liver:	n/a	n/a
34	MYBL2	chr14:24663557-24666134	HepG2	liver:	n/a	n/a
35	MYBL2	chr14:24663786-24666108	HepG2	liver:	n/a	n/a
36	CEBPB	chr14:24665385-24666059	GM12878	blood:	n/a	n/a
37	STAT5A	chr14:24665612-24666009	GM12878	blood:	n/a	n/a
38	PML	chr14:24664180-24666160	GM12878	blood:	n/a	chr14:24665639-24665647
39	MAX	chr14:24663739-24666119	HepG2	liver:	n/a	chr14:24664488-24664497 chr14:24664484-24664493
40	MBD4	chr14:24663838-24666020	HepG2	liver:	n/a	n/a
41	POLR2A	chr14:24664232-24666003	GM12892	blood:	n/a	n/a
42	NFIC	chr14:24664348-24666082	GM12878	blood:	n/a	n/a
43	POLR2A	chr14:24663783-24666177	H1-hESC	embryonic stem cell:	n/a	n/a
44	SPI1	chr14:24665383-24666147	GM12878	blood:	n/a	chr14:24665730-24665739
45	TEAD4	chr14:24664033-24666081	HepG2	liver:	n/a	n/a
46	MTA3	chr14:24663701-24666099	GM12878	blood:	n/a	n/a
47	EBF1	chr14:24664635-24666000	GM12878	blood:	n/a	chr14:24665820-24665830 chr14:24664981-24664992 chr14:24665820-24665829 chr14:24664980-24664993 chr14:24664982-24664992
48	MAX	chr14:24663566-24666064	HepG2	liver:	n/a	chr14:24664488-24664497 chr14:24664484-24664493
49	ELF1	chr14:24664314-24666061	HepG2	liver:	n/a	chr14:24664901-24664914
50	YY1	chr14:24665880-24666218	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:24608474..24613065-chr14:24662221..24666729,4	K562	blood:
2	chr14:24581893..24584671-chr14:24663785..24666116,3	K562	blood:
3	chr14:24663072..24666624-chr14:24679241..24683731,7	K562	blood:
4	chr14:24614938..24617925-chr14:24664131..24667025,3	K562	blood:
5	chr14:24664420..24666699-chr14:24881559..24884040,2	K562	blood:
6	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
7	chr14:24663873..24666575-chr14:24674141..24676718,3	K562	blood:
8	chr14:24644381..24646696-chr14:24665160..24667819,2	K562	blood:
9	chr14:24663376..24665996-chr14:24700353..24703613,3	K562	blood:
10	chr14:24655120..24666858-chr14:24765577..24776253,24	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP4A-1	chr14:24665964-24666475	l_944_chr14:24641101-24695318_testes

Variant related genes	Relation type
TM9SF1	TF binding region
ENSG00000100897	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000139908	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000100908	Chromatin interaction
ENSG00000205978	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000259321	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000100918	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000254692	Chromatin interaction
ENSG00000100911	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131288	1.00[ASN][1000 genomes]
rs10132189	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10136993	1.00[ASN][1000 genomes]
rs10140260	1.00[ASN][1000 genomes]
rs10142080	1.00[ASN][1000 genomes]
rs10142310	1.00[ASN][1000 genomes]
rs10144791	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146665	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17101758	1.00[ASN][1000 genomes]
rs28396996	1.00[ASN][1000 genomes]
rs28435365	1.00[ASN][1000 genomes]
rs28533649	1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs28636804	1.00[ASN][1000 genomes]
rs4470080	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7151467	1.00[ASN][1000 genomes]
rs8005722	1.00[ASN][1000 genomes]
rs8008047	1.00[ASN][1000 genomes]
rs8011199	1.00[ASN][1000 genomes]
rs8012049	1.00[ASN][1000 genomes]
rs8019514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv3357679	chr14:24663762-24666260	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24663600-24666600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:24663800-24666200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr14:24664000-24666000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:24664000-24666000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:24664000-24666000	Active TSS	Right Atrium	heart
6	chr14:24664000-24666200	Active TSS	H9 Cell Line	embryonic stem cell
7	chr14:24664000-24666400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:24664000-24666600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:24664000-24666600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr14:24664000-24667000	Active TSS	Pancreas	Pancrea
11	chr14:24664200-24666000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr14:24664200-24666000	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr14:24664200-24666000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
14	chr14:24664200-24666000	Active TSS	Left Ventricle	heart
15	chr14:24664200-24666000	Active TSS	Ovary	ovary
16	chr14:24664200-24666000	Active TSS	A549	lung
17	chr14:24664200-24666000	Active TSS	NHLF	lung
18	chr14:24664200-24666200	Active TSS	Psoas Muscle	Psoas
19	chr14:24664200-24666400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:24664200-24666400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr14:24664200-24666600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr14:24664400-24666000	Active TSS	H1 Cell Line	embryonic stem cell
23	chr14:24664400-24666200	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr14:24664400-24666400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:24664400-24666400	Active TSS	HSMM	muscle
26	chr14:24664400-24666800	Active TSS	K562	blood
27	chr14:24664600-24666000	Active TSS	Right Ventricle	heart
28	chr14:24665000-24666000	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr14:24665000-24666000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:24665000-24666000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:24665000-24666200	Flanking Active TSS	Placenta	Placenta
32	chr14:24665200-24666000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:24665200-24666000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr14:24665200-24666000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
35	chr14:24665200-24666000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr14:24665200-24666000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr14:24665200-24666000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr14:24665200-24666000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr14:24665200-24666000	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr14:24665200-24666000	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr14:24665200-24666000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr14:24665200-24666000	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr14:24665200-24666200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr14:24665200-24666200	Flanking Active TSS	Fetal Thymus	thymus
45	chr14:24665200-24666200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr14:24665200-24666200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr14:24665400-24666000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr14:24665400-24666000	Flanking Active TSS	Primary B cells from peripheral blood	blood
49	chr14:24665400-24666000	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr14:24665400-24666000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links