Variant report

Variant	rs28636804
Chromosome Location	chr14:24660216-24660217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24657069..24662255-chr14:24679017..24683823,7	K562	blood:
2	chr14:24659710..24661971-chr14:24783467..24786421,2	K562	blood:
3	chr14:24658469..24661265-chr14:24739057..24740636,2	K562	blood:
4	chr14:24655312..24660662-chr14:24700172..24703885,7	MCF-7	breast:
5	chr14:24561763..24563268-chr14:24657712..24660361,2	MCF-7	breast:
6	chr14:24656637..24660595-chr14:24683855..24686255,4	K562	blood:
7	chr14:24653860..24661964-chr14:24680820..24687057,41	MCF-7	breast:
8	chr14:24655120..24666858-chr14:24765577..24776253,24	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100949	Chromatin interaction
ENSG00000254692	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000260669	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000129559	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131288	1.00[ASN][1000 genomes]
rs10132189	1.00[ASN][1000 genomes]
rs10136993	1.00[ASN][1000 genomes]
rs10140260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142080	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142310	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143943	1.00[ASN][1000 genomes]
rs10144791	1.00[ASN][1000 genomes]
rs10146665	1.00[ASN][1000 genomes]
rs17101758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28373297	1.00[EUR][1000 genomes]
rs28396996	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28435365	1.00[ASN][1000 genomes]
rs28533649	1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs4470080	1.00[ASN][1000 genomes]
rs7151467	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005722	1.00[ASN][1000 genomes]
rs8008047	1.00[ASN][1000 genomes]
rs8011199	1.00[ASN][1000 genomes]
rs8012049	1.00[ASN][1000 genomes]
rs8019514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv1827678	chr14:24520544-24663325	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv901498	chr14:24591892-24662177	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	esv1804053	chr14:24642785-24660721	Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24658000-24661000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:24658000-24661000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:24658000-24662000	Weak transcription	Aorta	Aorta
4	chr14:24658000-24663400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:24658200-24660600	Weak transcription	NHDF-Ad	bronchial
6	chr14:24658200-24661200	Weak transcription	Colonic Mucosa	Colon
7	chr14:24658200-24661200	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:24658200-24661200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:24658200-24661400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:24658200-24661400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:24658200-24661400	Weak transcription	Right Atrium	heart
12	chr14:24658200-24663800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:24658200-24663800	Weak transcription	Psoas Muscle	Psoas
14	chr14:24658400-24661200	Weak transcription	Fetal Kidney	kidney
15	chr14:24658400-24661800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr14:24658600-24660400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:24658600-24660600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:24658600-24660800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr14:24658600-24661000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:24658600-24661000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:24658600-24661200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr14:24658600-24663200	Weak transcription	Stomach Mucosa	stomach
23	chr14:24658600-24663400	Strong transcription	Placenta	Placenta
24	chr14:24658600-24663400	Strong transcription	Fetal Stomach	stomach
25	chr14:24658600-24663600	Weak transcription	Fetal Heart	heart
26	chr14:24658800-24660400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr14:24658800-24660400	Weak transcription	A549	lung
28	chr14:24658800-24661000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:24658800-24661000	Weak transcription	HUVEC	blood vessel
30	chr14:24658800-24661400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr14:24658800-24661600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr14:24658800-24661600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:24658800-24661600	Weak transcription	Small Intestine	intestine
34	chr14:24658800-24662400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr14:24658800-24662600	Strong transcription	Adipose Nuclei	Adipose
36	chr14:24658800-24662600	Strong transcription	Brain Cingulate Gyrus	brain
37	chr14:24658800-24662600	Strong transcription	Thymus	Thymus
38	chr14:24658800-24662800	Strong transcription	Fetal Intestine Small	intestine
39	chr14:24658800-24663200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr14:24658800-24663200	Weak transcription	Fetal Brain Male	brain
41	chr14:24658800-24663400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr14:24658800-24663400	Strong transcription	Fetal Muscle Leg	muscle
43	chr14:24658800-24663400	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr14:24658800-24663600	Genic enhancers	HepG2	liver
45	chr14:24658800-24663600	Weak transcription	HSMMtube	muscle
46	chr14:24659000-24660400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:24659000-24660400	Weak transcription	Hela-S3	cervix
48	chr14:24659000-24660600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr14:24659000-24660600	Strong transcription	Brain Germinal Matrix	brain
50	chr14:24659000-24661000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links