Variant report

Variant	rs10131288
Chromosome Location	chr14:24697289-24697290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24697134-24697931	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:24697269-24697948	HepG2	liver:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24696906..24699761-chr14:24701286..24703983,2	K562	blood:
2	chr14:24682286..24684673-chr14:24694257..24697632,3	K562	blood:
3	chr14:24680743..24684673-chr14:24694257..24697632,5	K562	blood:
4	chr14:24656607..24659161-chr14:24696896..24699853,4	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP4A-1	chr14:24695811-24697918	NONHSAT036025

No data

Variant related genes	Relation type
GMPR2	TF binding region
ENSG00000254505	Chromatin interaction
ENSG00000196497	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000255526	Chromatin interaction
ENSG00000100938	Chromatin interaction
ENSG00000254692	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10132189	1.00[ASN][1000 genomes]
rs10136993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140260	1.00[ASN][1000 genomes]
rs10142080	1.00[ASN][1000 genomes]
rs10142310	1.00[ASN][1000 genomes]
rs10143943	1.00[ASN][1000 genomes]
rs10144791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146665	1.00[ASN][1000 genomes]
rs17101758	1.00[ASN][1000 genomes]
rs28396996	1.00[ASN][1000 genomes]
rs28435365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533649	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs28636804	1.00[ASN][1000 genomes]
rs4470080	1.00[ASN][1000 genomes]
rs7151467	1.00[ASN][1000 genomes]
rs8005722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008047	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012049	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24685400-24700000	Weak transcription	Spleen	Spleen
2	chr14:24685400-24700200	Weak transcription	Colonic Mucosa	Colon
3	chr14:24685400-24700200	Weak transcription	Gastric	stomach
4	chr14:24685400-24700400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:24685600-24700200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:24685600-24700200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:24685600-24700200	Weak transcription	Esophagus	oesophagus
8	chr14:24685600-24700200	Weak transcription	Psoas Muscle	Psoas
9	chr14:24685600-24700200	Weak transcription	Thymus	Thymus
10	chr14:24685600-24700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:24685600-24700400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:24685600-24700400	Weak transcription	Fetal Kidney	kidney
13	chr14:24685600-24700400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:24685600-24700400	Weak transcription	K562	blood
15	chr14:24685600-24700600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:24685800-24697400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:24685800-24698200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr14:24685800-24699000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr14:24685800-24699000	Weak transcription	Pancreas	Pancrea
20	chr14:24685800-24700000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:24685800-24700000	Weak transcription	Colon Smooth Muscle	Colon
22	chr14:24685800-24700000	Weak transcription	Lung	lung
23	chr14:24685800-24700200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:24685800-24700200	Weak transcription	Brain Anterior Caudate	brain
25	chr14:24685800-24700200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr14:24685800-24700200	Weak transcription	Brain Germinal Matrix	brain
27	chr14:24685800-24700200	Weak transcription	Brain Hippocampus Middle	brain
28	chr14:24685800-24700200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:24685800-24700200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:24685800-24700400	Weak transcription	Brain Angular Gyrus	brain
31	chr14:24686000-24700000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr14:24686000-24700000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:24686000-24700000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr14:24686200-24700000	Weak transcription	Fetal Brain Male	brain
35	chr14:24686200-24700400	Weak transcription	Stomach Mucosa	stomach
36	chr14:24687600-24697400	Weak transcription	Fetal Thymus	thymus
37	chr14:24687600-24700000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:24687600-24700200	Weak transcription	Right Ventricle	heart
39	chr14:24687600-24700200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:24687600-24700800	Weak transcription	Aorta	Aorta
41	chr14:24687800-24697400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:24687800-24698000	Weak transcription	Liver	Liver
43	chr14:24687800-24699800	Weak transcription	Primary B cells from cord blood	blood
44	chr14:24687800-24700000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr14:24687800-24700000	Weak transcription	Brain Substantia Nigra	brain
46	chr14:24687800-24700000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr14:24687800-24700000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr14:24687800-24700000	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:24687800-24700200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr14:24687800-24700200	Weak transcription	Adipose Nuclei	Adipose

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