Variant report

Variant	rs10132189
Chromosome Location	chr14:24666165-24666166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr14:24665319-24666689	GM12878	blood:	n/a	n/a
2	POLR2A	chr14:24663324-24667470	HepG2	liver:	n/a	n/a
3	HCFC1	chr14:24663864-24666214	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr14:24664428-24666168	GM12878	blood:	n/a	n/a
5	POLR2A	chr14:24663783-24666177	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr14:24666065-24666202	GM12878	blood:	n/a	n/a
7	YY1	chr14:24665880-24666218	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24608474..24613065-chr14:24662221..24666729,4	K562	blood:
2	chr14:24663072..24666624-chr14:24679241..24683731,7	K562	blood:
3	chr14:24614938..24617925-chr14:24664131..24667025,3	K562	blood:
4	chr14:24664420..24666699-chr14:24881559..24884040,2	K562	blood:
5	chr14:24662549..24668200-chr14:24676089..24685150,15	K562	blood:
6	chr14:24663873..24666575-chr14:24674141..24676718,3	K562	blood:
7	chr14:24644381..24646696-chr14:24665160..24667819,2	K562	blood:
8	chr14:24655120..24666858-chr14:24765577..24776253,24	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP4A-1	chr14:24665964-24666475	l_944_chr14:24641101-24695318_testes

No data

Variant related genes	Relation type
TM9SF1	TF binding region
ENSG00000100918	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000254692	Chromatin interaction
ENSG00000205978	Chromatin interaction
ENSG00000139908	Chromatin interaction
ENSG00000136305	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000092098	Chromatin interaction
ENSG00000213906	Chromatin interaction
ENSG00000259321	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000100911	Chromatin interaction
ENSG00000100908	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131288	1.00[ASN][1000 genomes]
rs10136993	1.00[ASN][1000 genomes]
rs10140260	1.00[ASN][1000 genomes]
rs10142080	1.00[ASN][1000 genomes]
rs10142310	1.00[ASN][1000 genomes]
rs10143943	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10144791	1.00[ASN][1000 genomes]
rs10146665	1.00[ASN][1000 genomes]
rs17101758	1.00[ASN][1000 genomes]
rs28396996	1.00[ASN][1000 genomes]
rs28435365	1.00[ASN][1000 genomes]
rs28533649	1.00[ASN][1000 genomes]
rs28589355	1.00[ASN][1000 genomes]
rs28636804	1.00[ASN][1000 genomes]
rs4470080	1.00[ASN][1000 genomes]
rs7151467	1.00[ASN][1000 genomes]
rs8005722	1.00[ASN][1000 genomes]
rs8008047	1.00[ASN][1000 genomes]
rs8011199	1.00[ASN][1000 genomes]
rs8012049	1.00[ASN][1000 genomes]
rs8019514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405661	chr14:24189883-24670942	Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	esv3357679	chr14:24663762-24666260	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24663600-24666600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:24663800-24666200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr14:24664000-24666200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr14:24664000-24666400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:24664000-24666600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:24664000-24666600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr14:24664000-24667000	Active TSS	Pancreas	Pancrea
8	chr14:24664200-24666200	Active TSS	Psoas Muscle	Psoas
9	chr14:24664200-24666400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:24664200-24666400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr14:24664200-24666600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr14:24664400-24666200	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr14:24664400-24666400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:24664400-24666400	Active TSS	HSMM	muscle
15	chr14:24664400-24666800	Active TSS	K562	blood
16	chr14:24665000-24666200	Flanking Active TSS	Placenta	Placenta
17	chr14:24665200-24666200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr14:24665200-24666200	Flanking Active TSS	Fetal Thymus	thymus
19	chr14:24665200-24666200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr14:24665200-24666200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr14:24665400-24666200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:24665400-24666200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr14:24665400-24666200	Flanking Active TSS	Thymus	Thymus
24	chr14:24665400-24666600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr14:24665400-24666600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:24665400-24666600	Flanking Active TSS	Dnd41	blood
27	chr14:24665600-24666200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:24665600-24666200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:24665600-24666200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:24665600-24666200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:24665600-24666200	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr14:24665600-24666200	Flanking Active TSS	Fetal Brain Female	brain
33	chr14:24665600-24666400	Active TSS	GM12878-XiMat	blood
34	chr14:24665600-24666600	Flanking Active TSS	Fetal Intestine Small	intestine
35	chr14:24665600-24667000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:24665600-24668000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:24665600-24670400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:24665600-24674800	Weak transcription	Esophagus	oesophagus
39	chr14:24665800-24666200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr14:24665800-24666200	Flanking Active TSS	Fetal Intestine Large	intestine
41	chr14:24665800-24666600	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr14:24665800-24666600	Enhancers	Lung	lung
43	chr14:24665800-24666600	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr14:24665800-24666800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:24665800-24666800	Enhancers	Placenta Amnion	Placenta Amnion
46	chr14:24665800-24667000	Enhancers	Fetal Muscle Trunk	muscle
47	chr14:24665800-24670600	Weak transcription	Spleen	Spleen
48	chr14:24665800-24670800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:24665800-24675000	Weak transcription	Aorta	Aorta
50	chr14:24665800-24681800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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