Variant report

Variant	rs12420497
Chromosome Location	chr11:26166174-26166175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11602100	0.81[EUR][1000 genomes]
rs11603053	0.82[EUR][1000 genomes]
rs12421967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802779	0.84[EUR][1000 genomes]
rs12805403	0.81[EUR][1000 genomes]
rs34566602	0.86[EUR][1000 genomes]
rs35300549	0.84[EUR][1000 genomes]
rs35313719	0.86[EUR][1000 genomes]
rs35383678	0.84[EUR][1000 genomes]
rs4072100	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4073431	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58419479	0.83[EUR][1000 genomes]
rs71480113	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26162800-26167000	Enhancers	Fetal Lung	lung
2	chr11:26164200-26166400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:26164200-26166400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26164400-26166400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:26164600-26166400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:26164800-26166200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:26165000-26166200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:26165000-26166600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:26165200-26166600	Enhancers	Liver	Liver
10	chr11:26165400-26166600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:26165600-26166200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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