Variant report

Variant	rs35300549
Chromosome Location	chr11:26227954-26227955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10501041	1.00[ASN][1000 genomes]
rs11601216	1.00[ASN][1000 genomes]
rs11601570	1.00[ASN][1000 genomes]
rs11602100	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602913	1.00[ASN][1000 genomes]
rs11603001	0.98[ASN][1000 genomes]
rs11603053	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603054	1.00[ASN][1000 genomes]
rs11603129	1.00[ASN][1000 genomes]
rs11603715	0.94[ASN][1000 genomes]
rs11605240	0.98[ASN][1000 genomes]
rs11605379	1.00[ASN][1000 genomes]
rs11605752	1.00[ASN][1000 genomes]
rs11605772	1.00[ASN][1000 genomes]
rs11606371	1.00[ASN][1000 genomes]
rs11607541	1.00[ASN][1000 genomes]
rs11820750	1.00[ASN][1000 genomes]
rs12420497	0.84[EUR][1000 genomes]
rs12421967	0.84[EUR][1000 genomes]
rs12785883	1.00[ASN][1000 genomes]
rs12790635	0.93[ASN][1000 genomes]
rs12790671	0.86[ASN][1000 genomes]
rs12791123	1.00[ASN][1000 genomes]
rs12791748	1.00[ASN][1000 genomes]
rs12791764	1.00[ASN][1000 genomes]
rs12796496	1.00[ASN][1000 genomes]
rs12797146	1.00[ASN][1000 genomes]
rs12798721	1.00[ASN][1000 genomes]
rs12799187	1.00[ASN][1000 genomes]
rs12799220	1.00[ASN][1000 genomes]
rs12799440	1.00[ASN][1000 genomes]
rs12799556	0.94[ASN][1000 genomes]
rs12799694	1.00[ASN][1000 genomes]
rs12800986	1.00[ASN][1000 genomes]
rs12801417	1.00[ASN][1000 genomes]
rs12801763	1.00[ASN][1000 genomes]
rs12802308	1.00[ASN][1000 genomes]
rs12802779	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803909	1.00[ASN][1000 genomes]
rs12805403	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806221	1.00[ASN][1000 genomes]
rs1318825	1.00[ASN][1000 genomes]
rs1318826	1.00[ASN][1000 genomes]
rs1381179	1.00[ASN][1000 genomes]
rs1381180	1.00[ASN][1000 genomes]
rs1471318	1.00[ASN][1000 genomes]
rs1578894	1.00[ASN][1000 genomes]
rs17243126	1.00[ASN][1000 genomes]
rs17308831	0.94[ASN][1000 genomes]
rs17308852	1.00[ASN][1000 genomes]
rs17308859	1.00[ASN][1000 genomes]
rs17308866	1.00[ASN][1000 genomes]
rs17308922	1.00[ASN][1000 genomes]
rs17308929	1.00[ASN][1000 genomes]
rs2349810	1.00[ASN][1000 genomes]
rs34006492	0.99[ASN][1000 genomes]
rs34055654	1.00[ASN][1000 genomes]
rs34249232	1.00[ASN][1000 genomes]
rs34277864	0.94[ASN][1000 genomes]
rs34336267	0.98[ASN][1000 genomes]
rs34391855	0.98[ASN][1000 genomes]
rs34417030	0.94[ASN][1000 genomes]
rs34566602	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34634213	1.00[ASN][1000 genomes]
rs34713660	1.00[ASN][1000 genomes]
rs34767513	1.00[ASN][1000 genomes]
rs34817561	1.00[ASN][1000 genomes]
rs34859438	0.94[ASN][1000 genomes]
rs34879862	1.00[ASN][1000 genomes]
rs34988725	1.00[ASN][1000 genomes]
rs35055734	1.00[ASN][1000 genomes]
rs35077459	0.99[ASN][1000 genomes]
rs35088680	0.99[ASN][1000 genomes]
rs35093706	1.00[ASN][1000 genomes]
rs35111424	0.93[ASN][1000 genomes]
rs35235023	1.00[ASN][1000 genomes]
rs35258770	1.00[ASN][1000 genomes]
rs35313719	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35383678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35479014	0.95[ASN][1000 genomes]
rs35567246	1.00[ASN][1000 genomes]
rs35719059	1.00[ASN][1000 genomes]
rs35733671	0.96[ASN][1000 genomes]
rs35746409	1.00[ASN][1000 genomes]
rs35766300	1.00[ASN][1000 genomes]
rs35868946	1.00[ASN][1000 genomes]
rs35926520	1.00[ASN][1000 genomes]
rs35970758	1.00[ASN][1000 genomes]
rs4072100	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4073431	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4073432	0.91[ASN][1000 genomes]
rs4300356	1.00[ASN][1000 genomes]
rs4313531	1.00[ASN][1000 genomes]
rs4313532	1.00[ASN][1000 genomes]
rs4323819	0.99[ASN][1000 genomes]
rs4390306	0.99[ASN][1000 genomes]
rs4424637	1.00[ASN][1000 genomes]
rs4459249	0.96[ASN][1000 genomes]
rs4498946	1.00[ASN][1000 genomes]
rs4542363	0.91[ASN][1000 genomes]
rs4550177	0.96[ASN][1000 genomes]
rs4620676	1.00[ASN][1000 genomes]
rs4623853	1.00[ASN][1000 genomes]
rs4923346	1.00[ASN][1000 genomes]
rs58419479	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59723314	1.00[ASN][1000 genomes]
rs61448692	1.00[ASN][1000 genomes]
rs66510770	1.00[ASN][1000 genomes]
rs66613374	0.99[ASN][1000 genomes]
rs66873040	1.00[ASN][1000 genomes]
rs66965677	1.00[ASN][1000 genomes]
rs67019540	1.00[ASN][1000 genomes]
rs67029124	1.00[ASN][1000 genomes]
rs67184583	1.00[ASN][1000 genomes]
rs67223308	1.00[ASN][1000 genomes]
rs67321699	1.00[ASN][1000 genomes]
rs67523310	0.96[ASN][1000 genomes]
rs67640189	0.99[ASN][1000 genomes]
rs67691143	1.00[ASN][1000 genomes]
rs67800780	1.00[ASN][1000 genomes]
rs67805620	1.00[ASN][1000 genomes]
rs67844042	1.00[ASN][1000 genomes]
rs7116694	0.98[ASN][1000 genomes]
rs7116714	1.00[ASN][1000 genomes]
rs71480106	0.99[ASN][1000 genomes]
rs71480107	0.93[ASN][1000 genomes]
rs71480108	0.93[ASN][1000 genomes]
rs71480109	0.93[ASN][1000 genomes]
rs71480110	1.00[ASN][1000 genomes]
rs71480112	1.00[ASN][1000 genomes]
rs71480113	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71480115	0.99[ASN][1000 genomes]
rs72872711	1.00[ASN][1000 genomes]
rs72872712	1.00[ASN][1000 genomes]
rs72872714	1.00[ASN][1000 genomes]
rs72872729	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72889674	1.00[ASN][1000 genomes]
rs72889675	1.00[ASN][1000 genomes]
rs7933096	1.00[ASN][1000 genomes]
rs7939607	1.00[ASN][1000 genomes]
rs7939749	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7940616	1.00[ASN][1000 genomes]
rs7951500	1.00[ASN][1000 genomes]
rs7952023	1.00[ASN][1000 genomes]
rs7952050	1.00[ASN][1000 genomes]
rs972169	1.00[ASN][1000 genomes]
rs972170	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26219800-26240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26226000-26228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:26226800-26230200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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