Variant report
Variant | rs17308922 |
---|---|
Chromosome Location | chr11:26254003-26254004 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10501041 | 1.00[ASN][1000 genomes] |
rs11029402 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11029403 | 0.96[AFR][1000 genomes] |
rs11029406 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11029409 | 0.97[AFR][1000 genomes] |
rs11029410 | 0.96[AFR][1000 genomes] |
rs11601216 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11601570 | 1.00[ASN][1000 genomes] |
rs11602100 | 1.00[ASN][1000 genomes] |
rs11602913 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11603001 | 0.83[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs11603053 | 1.00[ASN][1000 genomes] |
rs11603054 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11603129 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11603715 | 0.94[ASN][1000 genomes] |
rs11605240 | 0.83[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs11605379 | 1.00[ASN][1000 genomes] |
rs11605752 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11605772 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11605805 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11605852 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs11606371 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11607541 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs11820750 | 1.00[ASN][1000 genomes] |
rs12222295 | 0.92[AFR][1000 genomes] |
rs12785883 | 1.00[ASN][1000 genomes] |
rs12790635 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12790671 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12791123 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12791748 | 1.00[ASN][1000 genomes] |
rs12791764 | 1.00[ASN][1000 genomes] |
rs12796496 | 1.00[ASN][1000 genomes] |
rs12797146 | 1.00[ASN][1000 genomes] |
rs12798721 | 0.96[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12799187 | 1.00[ASN][1000 genomes] |
rs12799220 | 1.00[ASN][1000 genomes] |
rs12799440 | 1.00[ASN][1000 genomes] |
rs12799556 | 0.94[ASN][1000 genomes] |
rs12799694 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12800986 | 1.00[ASN][1000 genomes] |
rs12801417 | 1.00[ASN][1000 genomes] |
rs12801763 | 1.00[ASN][1000 genomes] |
rs12801876 | 0.97[AFR][1000 genomes] |
rs12802308 | 1.00[ASN][1000 genomes] |
rs12802779 | 1.00[ASN][1000 genomes] |
rs12803909 | 1.00[ASN][1000 genomes] |
rs12805185 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12805403 | 1.00[ASN][1000 genomes] |
rs12806221 | 1.00[ASN][1000 genomes] |
rs1318825 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1318826 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1381179 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1381180 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1461390 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1471318 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1578894 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs17243126 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs17308831 | 0.94[ASN][1000 genomes] |
rs17308852 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs17308859 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs17308866 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs17308929 | 0.96[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs1870757 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs1870758 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs1987347 | 0.85[AFR][1000 genomes] |
rs2349808 | 0.97[AFR][1000 genomes] |
rs2349810 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs34006492 | 0.99[ASN][1000 genomes] |
rs34055654 | 1.00[ASN][1000 genomes] |
rs34136348 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs34249232 | 1.00[ASN][1000 genomes] |
rs34277864 | 0.94[ASN][1000 genomes] |
rs34336267 | 0.98[ASN][1000 genomes] |
rs34391855 | 0.98[ASN][1000 genomes] |
rs34417030 | 0.94[ASN][1000 genomes] |
rs34566602 | 0.94[ASN][1000 genomes] |
rs34634213 | 1.00[ASN][1000 genomes] |
rs34713660 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs34767513 | 1.00[ASN][1000 genomes] |
rs34817561 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs34859438 | 0.94[ASN][1000 genomes] |
rs34879862 | 1.00[ASN][1000 genomes] |
rs34988725 | 1.00[ASN][1000 genomes] |
rs35048085 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs35055734 | 1.00[ASN][1000 genomes] |
rs35077459 | 0.99[ASN][1000 genomes] |
rs35088680 | 0.99[ASN][1000 genomes] |
rs35093706 | 1.00[ASN][1000 genomes] |
rs35111424 | 0.93[ASN][1000 genomes] |
rs35235023 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs35258770 | 1.00[ASN][1000 genomes] |
rs35300549 | 1.00[ASN][1000 genomes] |
rs35313719 | 0.94[ASN][1000 genomes] |
rs35383678 | 1.00[ASN][1000 genomes] |
rs35479014 | 0.95[ASN][1000 genomes] |
rs35567246 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs35719059 | 1.00[ASN][1000 genomes] |
rs35733671 | 0.96[ASN][1000 genomes] |
rs35746409 | 1.00[ASN][1000 genomes] |
rs35753453 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs35766300 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs35868946 | 1.00[ASN][1000 genomes] |
rs35926520 | 1.00[ASN][1000 genomes] |
rs35970758 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs36142320 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs4072100 | 0.91[ASN][1000 genomes] |
rs4073431 | 0.88[ASN][1000 genomes] |
rs4073432 | 0.91[ASN][1000 genomes] |
rs4277072 | 0.83[AFR][1000 genomes] |
rs4300356 | 1.00[ASN][1000 genomes] |
rs4307672 | 0.95[AFR][1000 genomes] |
rs4312024 | 0.97[AFR][1000 genomes] |
rs4313531 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4313532 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4323819 | 0.95[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs4390306 | 0.99[ASN][1000 genomes] |
rs4424637 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4459249 | 0.96[ASN][1000 genomes] |
rs4498946 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4542363 | 0.91[ASN][1000 genomes] |
rs4550177 | 0.96[ASN][1000 genomes] |
rs4620676 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs4623853 | 1.00[ASN][1000 genomes] |
rs4923346 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58419479 | 1.00[ASN][1000 genomes] |
rs59723314 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs61448692 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs66500173 | 0.83[AFR][1000 genomes] |
rs66510770 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs66613374 | 0.99[ASN][1000 genomes] |
rs66873040 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs66965677 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67019540 | 1.00[ASN][1000 genomes] |
rs67029124 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67184583 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67223308 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67321699 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67523310 | 0.96[ASN][1000 genomes] |
rs67640189 | 0.99[ASN][1000 genomes] |
rs67691143 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67800780 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs67805620 | 1.00[ASN][1000 genomes] |
rs67844042 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7116694 | 0.83[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs7116714 | 1.00[ASN][1000 genomes] |
rs71480106 | 0.99[ASN][1000 genomes] |
rs71480107 | 0.93[ASN][1000 genomes] |
rs71480108 | 0.93[ASN][1000 genomes] |
rs71480109 | 0.93[ASN][1000 genomes] |
rs71480110 | 1.00[ASN][1000 genomes] |
rs71480112 | 1.00[ASN][1000 genomes] |
rs71480113 | 1.00[ASN][1000 genomes] |
rs71480115 | 0.83[AFR][1000 genomes];0.99[ASN][1000 genomes] |
rs72872711 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72872712 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72872714 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs72872729 | 1.00[ASN][1000 genomes] |
rs72889674 | 1.00[ASN][1000 genomes] |
rs72889675 | 1.00[ASN][1000 genomes] |
rs7927888 | 0.96[AFR][1000 genomes] |
rs7933096 | 0.96[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7939607 | 1.00[ASN][1000 genomes] |
rs7939749 | 1.00[ASN][1000 genomes] |
rs7940616 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7941353 | 0.96[AFR][1000 genomes] |
rs7951500 | 1.00[ASN][1000 genomes] |
rs7952023 | 1.00[ASN][1000 genomes] |
rs7952050 | 1.00[ASN][1000 genomes] |
rs898731 | 0.97[AFR][1000 genomes] |
rs898732 | 0.97[AFR][1000 genomes] |
rs972169 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs972170 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832094 | chr11:26130733-26292782 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:26250200-26256000 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
2 | chr11:26251800-26259200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr11:26252800-26255600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr11:26253400-26256000 | Weak transcription | Hela-S3 | cervix |
5 | chr11:26253800-26255600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
6 | chr11:26253800-26255800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
7 | chr11:26253800-26256000 | Weak transcription | Muscle Satellite Cultured Cells | -- |
8 | chr11:26254000-26255800 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
9 | chr11:26254000-26255800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
10 | chr11:26254000-26255800 | Weak transcription | HUVEC | blood vessel |
11 | chr11:26254000-26255800 | Weak transcription | NHEK | skin |
12 | chr11:26254000-26256000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
13 | chr11:26254000-26256000 | Weak transcription | NHDF-Ad | bronchial |
14 | chr11:26254000-26256200 | Weak transcription | HMEC | breast |