Variant report

Variant	rs11029402
Chromosome Location	chr11:26250025-26250026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:22849848..22851465-chr11:26249283..26251670,2	K562	blood:

Variant related genes	Relation type
ENSG00000246225	Chromatin interaction
ENSG00000198168	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10767516	1.00[ASN][1000 genomes]
rs10834924	1.00[ASN][1000 genomes]
rs10834925	0.98[ASN][1000 genomes]
rs10834926	1.00[ASN][1000 genomes]
rs10834927	1.00[ASN][1000 genomes]
rs10834928	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029386	0.99[ASN][1000 genomes]
rs11029398	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029403	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029406	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029409	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029410	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601216	0.85[AFR][1000 genomes]
rs11602913	0.82[AFR][1000 genomes]
rs11603001	0.85[AFR][1000 genomes]
rs11603054	0.85[AFR][1000 genomes]
rs11603129	0.85[AFR][1000 genomes]
rs11605240	0.85[AFR][1000 genomes]
rs11605752	0.95[AFR][1000 genomes]
rs11605772	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11605805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605852	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606371	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11607541	0.85[AFR][1000 genomes]
rs11821508	0.88[ASN][1000 genomes]
rs12222295	0.91[AFR][1000 genomes]
rs12222777	0.94[ASN][1000 genomes]
rs12289787	1.00[ASN][1000 genomes]
rs12790635	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12790671	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12791123	0.82[AFR][1000 genomes]
rs12798721	0.97[AFR][1000 genomes]
rs12799694	0.85[AFR][1000 genomes]
rs12801876	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318825	0.85[AFR][1000 genomes]
rs1318826	0.85[AFR][1000 genomes]
rs1381178	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1381179	0.85[AFR][1000 genomes]
rs1381180	0.85[AFR][1000 genomes]
rs1461390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471318	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1578894	0.85[AFR][1000 genomes]
rs17243126	0.85[AFR][1000 genomes]
rs17308852	0.85[AFR][1000 genomes]
rs17308859	0.85[AFR][1000 genomes]
rs17308866	0.85[AFR][1000 genomes]
rs17308922	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17308929	0.95[AFR][1000 genomes]
rs1870757	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870758	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987347	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349808	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349810	0.96[AFR][1000 genomes]
rs2349811	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108827	0.96[ASN][1000 genomes]
rs34136348	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34634213	0.81[AFR][1000 genomes]
rs34713660	0.85[AFR][1000 genomes]
rs34817561	0.85[AFR][1000 genomes]
rs34988725	0.81[AFR][1000 genomes]
rs35048085	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35235023	0.83[AFR][1000 genomes]
rs35258770	0.81[AFR][1000 genomes]
rs35567246	0.85[AFR][1000 genomes]
rs35688550	0.96[ASN][1000 genomes]
rs35753453	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35766300	0.85[AFR][1000 genomes]
rs35970758	0.85[AFR][1000 genomes]
rs36142320	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4277072	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4282945	0.92[ASN][1000 genomes]
rs4307672	0.93[AFR][1000 genomes]
rs4312024	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313531	0.82[AFR][1000 genomes]
rs4313532	0.82[AFR][1000 genomes]
rs4323819	0.93[AFR][1000 genomes]
rs4424637	0.82[AFR][1000 genomes]
rs4427526	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498946	0.85[AFR][1000 genomes]
rs4620676	0.82[AFR][1000 genomes]
rs4623853	0.81[AFR][1000 genomes]
rs4923346	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59723314	0.82[AFR][1000 genomes]
rs61448692	0.82[AFR][1000 genomes]
rs66500173	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66510770	0.85[AFR][1000 genomes]
rs66873040	0.85[AFR][1000 genomes]
rs66965677	0.85[AFR][1000 genomes]
rs67029124	0.85[AFR][1000 genomes]
rs67184583	0.85[AFR][1000 genomes]
rs67223308	0.85[AFR][1000 genomes]
rs67321699	0.85[AFR][1000 genomes]
rs67691143	0.85[AFR][1000 genomes]
rs67800780	0.85[AFR][1000 genomes]
rs67844042	0.85[AFR][1000 genomes]
rs7116694	0.85[AFR][1000 genomes]
rs71480115	0.85[AFR][1000 genomes]
rs72872711	0.85[AFR][1000 genomes]
rs72872712	0.85[AFR][1000 genomes]
rs72872714	0.85[AFR][1000 genomes]
rs7927888	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7930180	0.94[ASN][1000 genomes]
rs7933096	0.97[AFR][1000 genomes]
rs7940616	0.96[AFR][1000 genomes]
rs7941353	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs898731	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898732	0.96[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972169	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26248000-26250200	Enhancers	HUVEC	blood vessel
2	chr11:26248000-26251800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:26248400-26253400	Enhancers	Hela-S3	cervix
4	chr11:26248400-26254000	Enhancers	NHDF-Ad	bronchial
5	chr11:26248600-26251000	Enhancers	HSMM	muscle
6	chr11:26248600-26253400	Enhancers	NHLF	lung
7	chr11:26248600-26253800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:26248600-26254000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:26248600-26254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:26248600-26254000	Enhancers	NHEK	skin
11	chr11:26249200-26251800	Enhancers	NH-A	brain
12	chr11:26249200-26252200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:26249200-26253600	Enhancers	Osteobl	bone
14	chr11:26249200-26253800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:26249200-26254000	Enhancers	HMEC	breast
16	chr11:26249400-26252000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:26249400-26252000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:26249400-26252000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:26249400-26254000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:26249600-26250600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:26249800-26250200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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