Variant report

Variant	rs3108827
Chromosome Location	chr11:26219269-26219270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10501041	0.80[EUR][1000 genomes]
rs10767516	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834924	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834925	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10834926	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834927	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834928	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029386	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029398	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029402	0.96[ASN][1000 genomes]
rs11029403	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029406	0.94[ASN][1000 genomes]
rs11029409	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029410	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11601570	0.81[EUR][1000 genomes]
rs11605805	1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs11605852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11821508	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12222777	0.90[ASN][1000 genomes]
rs12289787	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12799187	0.80[EUR][1000 genomes]
rs12799220	0.80[EUR][1000 genomes]
rs12799440	0.80[EUR][1000 genomes]
rs12801417	0.80[EUR][1000 genomes]
rs12801876	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12805185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12806221	0.80[EUR][1000 genomes]
rs1381178	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1461390	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1870757	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1870758	0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1987347	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2349808	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2349811	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34136348	0.95[ASN][1000 genomes]
rs34859438	0.80[EUR][1000 genomes]
rs35048085	0.93[ASN][1000 genomes]
rs35055734	0.80[EUR][1000 genomes]
rs35077459	0.80[EUR][1000 genomes]
rs35093706	0.80[EUR][1000 genomes]
rs35688550	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35746409	0.80[EUR][1000 genomes]
rs35753453	0.93[ASN][1000 genomes]
rs36142320	0.94[ASN][1000 genomes]
rs4277072	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4282945	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4307672	0.84[EUR][1000 genomes]
rs4312024	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4427526	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4459249	0.80[EUR][1000 genomes]
rs4542363	0.81[EUR][1000 genomes]
rs66500173	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66613374	0.80[EUR][1000 genomes]
rs67019540	0.81[EUR][1000 genomes]
rs67523310	0.80[EUR][1000 genomes]
rs67640189	0.80[EUR][1000 genomes]
rs67805620	0.80[EUR][1000 genomes]
rs7927888	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7930180	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941353	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7951500	0.80[EUR][1000 genomes]
rs898731	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs898732	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26211600-26220600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:26211800-26220200	Weak transcription	NHLF	lung
3	chr11:26212400-26225000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26212600-26219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:26212600-26220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:26216800-26220800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:26217000-26220400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:26217400-26219400	Weak transcription	Placenta	Placenta
9	chr11:26217400-26220000	Weak transcription	NHDF-Ad	bronchial
10	chr11:26217400-26220600	Weak transcription	Osteobl	bone
11	chr11:26218200-26220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:26219200-26220400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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