Variant report

Variant	rs11029403
Chromosome Location	chr11:26253701-26253702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10501041	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767516	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834924	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834925	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10834926	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834927	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834928	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029386	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029398	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029402	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029406	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11029409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601216	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11601570	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11602913	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11603001	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11603054	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11603129	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11603715	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11605240	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11605379	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11605752	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11605772	0.95[AFR][1000 genomes]
rs11605805	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11605852	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11606371	0.95[AFR][1000 genomes]
rs11607541	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11820750	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11821508	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12222295	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs12222777	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12289787	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785883	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12790635	0.92[AFR][1000 genomes]
rs12791123	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12791748	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12791764	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12796496	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12797146	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12798721	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12799187	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12799220	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12799440	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12799556	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12799694	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12800986	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12801417	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12801763	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12801876	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802308	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12803909	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12805185	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12806221	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1318825	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1318826	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1381178	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1381179	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1381180	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1461390	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1471318	0.93[AFR][1000 genomes]
rs1578894	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17243126	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308831	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17308852	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308859	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308866	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17308922	0.96[AFR][1000 genomes]
rs17308929	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1870757	1.00[ASN][1000 genomes]
rs1870758	1.00[ASN][1000 genomes]
rs1987347	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349810	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2349811	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108827	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34006492	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34055654	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34136348	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs34249232	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34336267	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34391855	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34417030	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34634213	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34713660	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34767513	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34817561	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34859438	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34879862	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34988725	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35048085	0.97[ASN][1000 genomes]
rs35055734	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35077459	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35088680	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35093706	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35111424	0.82[EUR][1000 genomes]
rs35235023	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35258770	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35479014	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35567246	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35688550	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35719059	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35733671	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35746409	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35753453	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35766300	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35868946	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35926520	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35970758	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36142320	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4277072	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282945	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4300356	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4307672	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4312024	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313531	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4313532	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4323819	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4390306	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4424637	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4427526	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4459249	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4498946	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4542363	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4550177	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4620676	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4623853	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59723314	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61448692	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66500173	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66510770	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66613374	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66873040	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66965677	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67019540	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67029124	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67184583	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67223308	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67321699	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67523310	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67640189	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67691143	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67800780	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67805620	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67844042	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7116694	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7116714	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71480106	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71480107	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71480108	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71480109	0.85[AMR][1000 genomes]
rs71480110	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71480112	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71480115	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72872711	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72872712	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72872714	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72889674	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72889675	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7927888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930180	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7933096	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7939607	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7940616	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7941353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951500	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7952023	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7952050	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs898731	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898732	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972169	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs972170	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26248400-26254000	Enhancers	NHDF-Ad	bronchial
2	chr11:26248600-26253800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:26248600-26254000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:26248600-26254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26248600-26254000	Enhancers	NHEK	skin
6	chr11:26249200-26253800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:26249200-26254000	Enhancers	HMEC	breast
8	chr11:26249400-26254000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:26250200-26256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:26251000-26254000	Enhancers	HUVEC	blood vessel
11	chr11:26251800-26259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:26252800-26253800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:26252800-26255600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:26253400-26256000	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links