Variant report

Variant	rs1870757
Chromosome Location	chr11:26249784-26249785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:22849848..22851465-chr11:26249283..26251670,2	K562	blood:

Variant related genes	Relation type
ENSG00000198168	Chromatin interaction
ENSG00000246225	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10767516	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10834924	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10834925	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10834926	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10834927	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10834928	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029386	0.99[ASN][1000 genomes]
rs11029398	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11029402	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029403	1.00[ASN][1000 genomes]
rs11029406	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029409	0.98[ASN][1000 genomes]
rs11029410	1.00[ASN][1000 genomes]
rs11605772	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11605805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606371	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11821508	0.88[ASN][1000 genomes]
rs12222777	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12289787	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12790635	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12790671	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12801876	1.00[ASN][1000 genomes]
rs12805185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381178	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1461390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471318	0.96[CEU][hapmap];0.83[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17308922	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1870758	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987347	1.00[ASN][1000 genomes]
rs2349808	1.00[ASN][1000 genomes]
rs2349811	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3108827	0.96[ASN][1000 genomes]
rs34136348	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35048085	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35688550	0.96[ASN][1000 genomes]
rs35753453	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36142320	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4277072	1.00[ASN][1000 genomes]
rs4282945	0.92[ASN][1000 genomes]
rs4312024	1.00[ASN][1000 genomes]
rs4427526	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4923346	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66500173	1.00[ASN][1000 genomes]
rs7927888	1.00[ASN][1000 genomes]
rs7930180	0.94[ASN][1000 genomes]
rs7941353	1.00[ASN][1000 genomes]
rs898731	1.00[ASN][1000 genomes]
rs898732	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26241600-26249800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26248000-26250200	Enhancers	HUVEC	blood vessel
3	chr11:26248000-26251800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26248400-26253400	Enhancers	Hela-S3	cervix
5	chr11:26248400-26254000	Enhancers	NHDF-Ad	bronchial
6	chr11:26248600-26251000	Enhancers	HSMM	muscle
7	chr11:26248600-26253400	Enhancers	NHLF	lung
8	chr11:26248600-26253800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:26248600-26254000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:26248600-26254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:26248600-26254000	Enhancers	NHEK	skin
12	chr11:26249200-26251800	Enhancers	NH-A	brain
13	chr11:26249200-26252200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:26249200-26253600	Enhancers	Osteobl	bone
15	chr11:26249200-26253800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:26249200-26254000	Enhancers	HMEC	breast
17	chr11:26249400-26252000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:26249400-26252000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:26249400-26252000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:26249400-26254000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:26249600-26250600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links