Variant report

Variant	rs12421556
Chromosome Location	chr11:57808636-57808637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12417338	0.86[ASN][1000 genomes]
rs12418614	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17458061	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2175276	0.86[ASN][1000 genomes]
rs2866831	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55665208	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56023680	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56245847	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61903961	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61903969	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61904010	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904013	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904025	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61904041	0.83[EUR][1000 genomes]
rs61905316	0.86[ASN][1000 genomes]
rs61905341	0.86[ASN][1000 genomes]
rs61905342	0.86[ASN][1000 genomes]
rs61905343	0.86[ASN][1000 genomes]
rs61905344	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61905345	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7108167	0.86[ASN][1000 genomes]
rs7112942	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7128781	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72915744	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72917859	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72919837	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925491	0.86[ASN][1000 genomes]
rs7944888	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7945120	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
2	chr11:57808200-57809000	Enhancers	Pancreas	Pancrea
3	chr11:57808400-57809000	ZNF genes & repeats	Lung	lung
4	chr11:57808600-57809000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links