Variant report

Variant	rs7108167
Chromosome Location	chr11:57757626-57757627
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1031232	1.00[JPT][hapmap]
rs11822108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11824895	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12417338	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418614	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12419849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12420385	1.00[JPT][hapmap]
rs12421556	0.86[ASN][1000 genomes]
rs1349483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17458061	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17538527	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2175276	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441964	1.00[JPT][hapmap]
rs2866831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41325844	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55665208	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55920028	0.99[EUR][1000 genomes]
rs56023680	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56054495	0.90[EUR][1000 genomes]
rs56245847	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61903961	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61903969	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61904010	0.86[ASN][1000 genomes]
rs61904013	0.86[ASN][1000 genomes]
rs61904025	0.86[ASN][1000 genomes]
rs61905316	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61905341	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61905342	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61905343	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61905344	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61905345	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107162	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7112942	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7121825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7128781	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72915744	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72917859	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72919837	0.86[ASN][1000 genomes]
rs7925491	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942438	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7944888	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7945120	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs921443	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv328	chr11:57744748-57789940	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3510955	chr11:57753826-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3510957	chr11:57753826-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3510956	chr11:57754026-57762724	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1793974	chr11:57754243-57758808	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	nsv498759	chr11:57754444-57762114	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv18668	chr11:57755622-57761480	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3512188	chr11:57756426-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3512189	chr11:57756426-57762624	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv1805062	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv1809511	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv1814272	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
17	esv1814910	chr11:57756568-57761372	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
18	esv1813771	chr11:57756568-57767699	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3474287	chr11:57756676-57763574	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
20	esv3474298	chr11:57756676-57763574	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57749800-57758800	Weak transcription	HepG2	liver

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