Variant report

Variant	rs12422212
Chromosome Location	chr11:24778459-24778460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv897094	chr11:24761831-24793160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv1044583	chr11:24772936-24831557	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv553822	chr11:24774037-24786653	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv897095	chr11:24774864-24793160	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv553823	chr11:24778111-24788677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv897096	chr11:24778111-24793160	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv523280	chr11:24778459-24786653	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv553824	chr11:24778459-24788677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv897097	chr11:24778459-24793715	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv897098	chr11:24778459-24814076	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24769000-24779000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:24777600-24781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:24777800-24778600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:24778400-24778600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links