Variant report

Variant	rs12422530
Chromosome Location	chr12:103482733-103482734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4764932	1.00[ASN][1000 genomes]
rs4764934	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73176071	1.00[ASN][1000 genomes]
rs73176072	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832501	chr12:103463927-103648825	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103479600-103484600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr12:103479800-103484000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:103479800-103484800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:103479800-103484800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:103480600-103483600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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