Variant report

Variant	rs12425518
Chromosome Location	chr12:48920006-48920007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:48917515..48920061-chr12:49210634..49213027,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167535	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11168584	0.93[EUR][1000 genomes]
rs11168601	0.82[EUR][1000 genomes]
rs11609658	0.86[EUR][1000 genomes]
rs11611327	0.90[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.80[ASN][1000 genomes]
rs11612896	0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs11613869	0.95[EUR][1000 genomes]
rs11829869	0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs11830262	0.93[EUR][1000 genomes]
rs11832311	0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs11833650	0.93[EUR][1000 genomes]
rs11834979	0.93[EUR][1000 genomes]
rs11836257	0.91[EUR][1000 genomes]
rs11837374	0.93[EUR][1000 genomes]
rs12424097	0.95[EUR][1000 genomes]
rs12424940	0.93[EUR][1000 genomes]
rs17123105	0.82[EUR][1000 genomes]
rs17123106	0.82[EUR][1000 genomes]
rs17123108	0.82[EUR][1000 genomes]
rs17123109	1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs17123138	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2731085	0.88[ASN][1000 genomes]
rs34400124	0.91[EUR][1000 genomes]
rs4146339	0.89[EUR][1000 genomes]
rs4146340	0.96[YRI][hapmap];0.89[EUR][1000 genomes]
rs4620769	0.94[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs4760632	0.86[EUR][1000 genomes]
rs4760727	0.86[EUR][1000 genomes]
rs56796388	0.93[EUR][1000 genomes]
rs60874066	0.95[EUR][1000 genomes]
rs61096762	0.86[EUR][1000 genomes]
rs72644858	0.93[EUR][1000 genomes]
rs72644859	0.93[EUR][1000 genomes]
rs72644862	0.93[EUR][1000 genomes]
rs72644863	0.93[EUR][1000 genomes]
rs72644864	0.91[EUR][1000 genomes]
rs7306166	0.82[CEU][hapmap]
rs73300707	0.95[EUR][1000 genomes]
rs73300718	0.89[EUR][1000 genomes]
rs73302549	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74087209	0.95[EUR][1000 genomes]
rs7966826	0.94[GIH][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap]
rs7967630	0.83[EUR][1000 genomes]
rs9788163	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv1803653	chr12:48905575-48923774	Weak transcription Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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