Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11609658	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11613869	0.88[EUR][1000 genomes]
rs12318285	0.91[CHB][hapmap]
rs12424097	0.88[EUR][1000 genomes]
rs12425518	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs17123109	0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs17123138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2731072	0.91[CHB][hapmap]
rs4760632	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4760727	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55782635	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs56228147	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs56252733	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60874066	0.88[EUR][1000 genomes]
rs61096762	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7306166	1.00[CEU][hapmap]
rs73300707	0.88[EUR][1000 genomes]
rs73300718	0.83[EUR][1000 genomes]
rs73302549	0.88[EUR][1000 genomes]
rs74087209	0.88[EUR][1000 genomes]
rs7969122	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9788163	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1047600	chr12:48927514-48954225	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1048307	chr12:48927514-48958949	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48948200-48949600	Weak transcription	K562	blood
2	chr12:48948200-48949800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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