Variant report

Variant	rs12427956
Chromosome Location	chr13:38002828-38002829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12427961	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12429268	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1322796	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1407606	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1830656	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1853325	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4941869	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7327444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7986151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7992122	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7992636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532055	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9532056	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9532057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9532062	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9532065	0.83[EUR][1000 genomes]
rs9547854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547857	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547858	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547859	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547863	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9547874	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9547878	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9547879	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547881	0.87[EUR][1000 genomes]
rs9547882	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9547885	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9547886	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9547901	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547903	0.83[YRI][hapmap];0.80[EUR][1000 genomes]
rs9646095	0.83[YRI][hapmap];0.80[EUR][1000 genomes]
rs9646096	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37993600-38003600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:37999400-38003400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:38002000-38003600	Enhancers	Fetal Heart	heart

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