Variant report

Variant	rs9547881
Chromosome Location	chr13:38024962-38024963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12427956	0.87[EUR][1000 genomes]
rs12427961	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12429268	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1322796	0.87[EUR][1000 genomes]
rs1407606	0.87[EUR][1000 genomes]
rs1830656	0.87[EUR][1000 genomes]
rs1853325	0.87[EUR][1000 genomes]
rs4941869	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7327444	0.87[EUR][1000 genomes]
rs7986151	0.87[EUR][1000 genomes]
rs7992636	0.87[EUR][1000 genomes]
rs9532057	0.87[EUR][1000 genomes]
rs9532062	0.92[EUR][1000 genomes]
rs9532065	0.87[EUR][1000 genomes]
rs9547854	0.87[EUR][1000 genomes]
rs9547855	0.87[EUR][1000 genomes]
rs9547856	0.87[EUR][1000 genomes]
rs9547857	0.87[EUR][1000 genomes]
rs9547858	0.87[EUR][1000 genomes]
rs9547859	0.87[EUR][1000 genomes]
rs9547860	0.87[EUR][1000 genomes]
rs9547863	0.87[EUR][1000 genomes]
rs9547870	0.87[EUR][1000 genomes]
rs9547874	0.94[EUR][1000 genomes]
rs9547878	0.94[EUR][1000 genomes]
rs9547879	0.92[EUR][1000 genomes]
rs9547882	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9547885	0.94[EUR][1000 genomes]
rs9547886	0.88[EUR][1000 genomes]
rs9547901	0.92[EUR][1000 genomes]
rs9547903	0.85[EUR][1000 genomes]
rs9646095	0.85[EUR][1000 genomes]
rs9646096	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38021400-38025000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38021400-38027200	Weak transcription	Osteobl	bone
3	chr13:38022400-38026200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:38022600-38026200	Weak transcription	NHDF-Ad	bronchial
5	chr13:38022800-38025400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:38022800-38026000	Weak transcription	Colon Smooth Muscle	Colon
7	chr13:38022800-38027000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:38022800-38027400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:38024200-38026400	Weak transcription	Fetal Stomach	stomach
10	chr13:38024400-38026000	Weak transcription	Muscle Satellite Cultured Cells	--

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