Variant report

Variant	rs12428727
Chromosome Location	chr13:48503741-48503742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11838539	1.00[CEU][hapmap]
rs12427516	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12429341	0.96[AFR][1000 genomes]
rs12429348	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs12430076	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12430172	0.87[AMR][1000 genomes]
rs12430395	0.96[AFR][1000 genomes]
rs1968029	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap]
rs2182374	1.00[CEU][hapmap]
rs57698455	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1803690	chr13:48470681-48508091	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48477000-48506400	Weak transcription	Psoas Muscle	Psoas
2	chr13:48492200-48510800	Weak transcription	Left Ventricle	heart
3	chr13:48495200-48506800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:48496600-48506600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:48501000-48531200	Weak transcription	Spleen	Spleen
6	chr13:48502000-48530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:48502600-48507000	Weak transcription	Adipose Nuclei	Adipose
8	chr13:48502600-48513600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr13:48503000-48503800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:48503200-48503800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:48503200-48503800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:48503200-48503800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:48503400-48504000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:48503600-48503800	Enhancers	NHDF-Ad	bronchial
15	chr13:48503600-48512400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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