Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUCLA2-4	chr13:48464985-48466403	XLOC_010601

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12427964	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12428055	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12428102	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428727	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12429105	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12429341	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12429348	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12429746	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12429993	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12430076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12430172	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12430395	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12431057	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1968029	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2094191	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2148242	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2182374	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2182377	0.82[ASN][1000 genomes]
rs2897496	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57957392	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58634823	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8002322	0.82[ASN][1000 genomes]
rs840430	0.82[ASN][1000 genomes]
rs9534910	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv933980	chr13:48431000-48557419	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48451000-48480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:48453800-48471600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:48457200-48478000	Weak transcription	Adipose Nuclei	Adipose
4	chr13:48461000-48472200	Weak transcription	Spleen	Spleen
5	chr13:48461000-48472400	Weak transcription	Lung	lung
6	chr13:48461000-48478200	Weak transcription	Left Ventricle	heart
7	chr13:48463600-48474600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:48464600-48467400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:48464800-48469800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:48465000-48465800	Enhancers	HSMMtube	muscle
11	chr13:48465000-48467400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr13:48465000-48467400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:48465000-48484000	Weak transcription	Primary T cells from cord blood	blood
14	chr13:48465200-48466200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr13:48465200-48478200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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