Variant report

Variant	rs12429445
Chromosome Location	chr13:110650457-110650458
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12428468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12428472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12429480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12429912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12429915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34763349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58619513	0.84[ASN][1000 genomes]
rs7981509	0.84[ASN][1000 genomes]
rs7982954	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7987137	0.84[ASN][1000 genomes]
rs7994376	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9588066	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110638400-110650800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110647600-110651000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:110647600-110651400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:110648600-110650600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:110649200-110652600	Enhancers	Liver	Liver
6	chr13:110649800-110652600	Enhancers	Adipose Nuclei	Adipose
7	chr13:110649800-110654800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:110649800-110655000	Enhancers	Hela-S3	cervix
9	chr13:110650000-110650600	Enhancers	A549	lung
10	chr13:110650200-110650600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:110650400-110651400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:110650400-110651600	Weak transcription	Fetal Muscle Leg	muscle
13	chr13:110650400-110652200	Enhancers	Fetal Kidney	kidney
14	chr13:110650400-110655000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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