Variant report

Variant	rs7981509
Chromosome Location	chr13:110666262-110666263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110651700..110653449-chr13:110664832..110667633,2	K562	blood:
2	chr13:110658379..110661796-chr13:110663475..110666715,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12428285	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12428468	0.84[ASN][1000 genomes]
rs12428472	0.84[ASN][1000 genomes]
rs12429247	0.84[ASN][1000 genomes]
rs12429364	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12429445	0.84[ASN][1000 genomes]
rs12429480	0.81[ASN][1000 genomes]
rs12430469	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12430929	0.92[EUR][1000 genomes]
rs12430945	0.92[EUR][1000 genomes]
rs34633471	0.87[ASN][1000 genomes]
rs34763349	0.81[ASN][1000 genomes]
rs35453261	0.87[ASN][1000 genomes]
rs35579024	0.87[ASN][1000 genomes]
rs35699444	0.87[ASN][1000 genomes]
rs35757068	0.87[ASN][1000 genomes]
rs35850183	0.87[ASN][1000 genomes]
rs36033848	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56323215	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58619513	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61155717	0.92[EUR][1000 genomes]
rs7982954	0.85[ASN][1000 genomes]
rs7986126	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7987137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7994376	0.81[ASN][1000 genomes]
rs9588074	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9588077	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9588078	0.88[EUR][1000 genomes]
rs9989105	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842097	chr13:110644990-110680944	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901004	chr13:110653666-110682916	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv11075	chr13:110663770-110667708	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110659200-110669800	Weak transcription	Pancreas	Pancrea
2	chr13:110661000-110666800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110661200-110669400	Enhancers	HSMM	muscle
4	chr13:110662600-110666400	Enhancers	HMEC	breast
5	chr13:110662600-110668600	Enhancers	HSMMtube	muscle
6	chr13:110662800-110671000	Enhancers	NHEK	skin
7	chr13:110663200-110667000	Weak transcription	Left Ventricle	heart
8	chr13:110663400-110666800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:110663400-110666800	Weak transcription	Fetal Heart	heart
10	chr13:110663400-110667000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr13:110663400-110670600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:110664000-110666400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:110664800-110668600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:110665400-110667600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:110665400-110669800	Weak transcription	HUVEC	blood vessel
16	chr13:110665600-110666800	Enhancers	A549	lung
17	chr13:110665600-110667600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:110665600-110668000	Weak transcription	NHDF-Ad	bronchial
19	chr13:110665600-110669200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr13:110665600-110669400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:110665600-110669600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr13:110665800-110666800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:110665800-110666800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr13:110665800-110667200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:110665800-110667200	Weak transcription	NHLF	lung
26	chr13:110665800-110667600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:110665800-110668000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:110665800-110669400	Weak transcription	NH-A	brain
29	chr13:110665800-110669600	Weak transcription	Hela-S3	cervix
30	chr13:110666000-110666400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:110666000-110667600	Weak transcription	Osteobl	bone
32	chr13:110666200-110666600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:110666200-110668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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