Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COL4A1-2	chr13:110686399-110689318	XLOC_010719

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12428285	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12429364	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12430469	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12430929	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12430945	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34633471	0.92[ASN][1000 genomes]
rs35453261	0.92[ASN][1000 genomes]
rs35579024	0.92[ASN][1000 genomes]
rs35699444	0.92[ASN][1000 genomes]
rs35757068	0.92[ASN][1000 genomes]
rs35850183	0.92[ASN][1000 genomes]
rs36033848	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56323215	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58619513	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61155717	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7981509	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7986126	0.96[EUR][1000 genomes]
rs7987137	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9588074	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9588078	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9989105	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110678400-110690600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:110680600-110688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:110682200-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:110683600-110690000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:110684000-110688600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:110686400-110686600	Genic enhancers	Aorta	Aorta

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