Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12428285	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12429364	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12430469	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12430929	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12430945	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34633471	0.88[ASN][1000 genomes]
rs35453261	0.88[ASN][1000 genomes]
rs35579024	0.88[ASN][1000 genomes]
rs35699444	0.88[ASN][1000 genomes]
rs35757068	0.88[ASN][1000 genomes]
rs35850183	0.88[ASN][1000 genomes]
rs36033848	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56323215	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58619513	0.88[EUR][1000 genomes]
rs61155717	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7981509	0.88[EUR][1000 genomes]
rs7986126	0.91[EUR][1000 genomes]
rs7987137	0.88[EUR][1000 genomes]
rs9588074	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9588077	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9989105	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110682200-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:110687400-110696800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:110689200-110695600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:110689200-110695600	Weak transcription	Gastric	stomach
5	chr13:110689200-110696800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:110689200-110700200	Weak transcription	Right Atrium	heart
7	chr13:110689400-110695600	Weak transcription	Aorta	Aorta
8	chr13:110689400-110695800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:110689600-110694800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:110690600-110691800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:110691600-110694600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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