Variant report

Variant	rs12429540
Chromosome Location	chr13:38342493-38342494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11147667	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11147668	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11147671	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11618049	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11620255	0.85[AFR][1000 genomes]
rs12430948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12858218	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12861121	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12869016	0.85[ASN][1000 genomes]
rs12869304	0.81[ASN][1000 genomes]
rs12874552	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12875518	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12875577	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1333358	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1924301	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34907223	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35989386	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs61955521	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753974	chr13:38341331-38363450	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38341000-38349800	Weak transcription	Osteobl	bone
2	chr13:38342000-38342800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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