Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11147667	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11147668	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11618049	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11620255	0.82[AMR][1000 genomes]
rs12429540	0.81[ASN][1000 genomes]
rs12430621	0.85[AMR][1000 genomes]
rs12430948	0.82[ASN][1000 genomes]
rs12853617	0.85[AMR][1000 genomes]
rs12858218	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12861121	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12865577	0.87[AMR][1000 genomes]
rs12867999	0.82[AMR][1000 genomes]
rs12869016	0.83[ASN][1000 genomes]
rs12874552	0.82[ASN][1000 genomes]
rs12875518	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12875577	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12876565	0.87[AMR][1000 genomes]
rs1333358	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17262400	0.87[AMR][1000 genomes]
rs1924300	0.85[AMR][1000 genomes]
rs1924301	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2025402	0.89[AMR][1000 genomes]
rs2025403	0.87[AMR][1000 genomes]
rs2184124	0.87[AMR][1000 genomes]
rs34907223	0.82[ASN][1000 genomes]
rs35989386	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4365182	0.87[AMR][1000 genomes]
rs61955521	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3383124	chr13:38318752-38320800	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38307600-38330800	Weak transcription	Ovary	ovary
2	chr13:38308200-38328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:38309200-38320600	Weak transcription	NHLF	lung
4	chr13:38309600-38321000	Weak transcription	Osteobl	bone
5	chr13:38316000-38320200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:38316000-38321000	Weak transcription	NHDF-Ad	bronchial
7	chr13:38316000-38328200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:38316600-38320600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:38319000-38320200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr13:38319000-38323000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:38319200-38320800	Weak transcription	NH-A	brain

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