Variant report

Variant	rs12431836
Chromosome Location	chr14:24824353-24824354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
RNU6-802P	TF binding region
ENSG00000100445	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000207141	Chromatin interaction
ENSG00000139899	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12050389	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12433338	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2332325	0.82[EUR][1000 genomes]
rs28365903	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs45565135	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7148384	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8003102	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	esv3342126	chr14:24824016-24824400	Enhancers Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24818600-24824600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:24820600-24824800	Enhancers	NHDF-Ad	bronchial
3	chr14:24821200-24824600	Weak transcription	Esophagus	oesophagus
4	chr14:24821200-24829200	Weak transcription	Placenta	Placenta
5	chr14:24822400-24824600	Enhancers	Fetal Intestine Small	intestine
6	chr14:24822800-24824600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:24822800-24824800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:24822800-24824800	Enhancers	Stomach Mucosa	stomach
9	chr14:24823000-24824600	Enhancers	HMEC	breast
10	chr14:24823000-24824800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr14:24823400-24824600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:24823400-24824600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:24823400-24829800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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