Variant report

Variant	rs7148384
Chromosome Location	chr14:24828814-24828815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000100445	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100968	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10362	0.83[ASN][1000 genomes]
rs11158663	0.80[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12050389	0.80[EUR][1000 genomes]
rs12431836	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12433338	0.84[ASW][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs2332325	0.80[EUR][1000 genomes]
rs28365903	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs45565135	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7158837	0.80[CHB][hapmap];0.84[CHD][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8003102	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7148384	RIPK3	cis	parietal	SCAN
rs7148384	NGDN	cis	parietal	SCAN
rs7148384	CMA1	cis	cerebellum	SCAN
rs7148384	TGM1	cis	cerebellum	SCAN
rs7148384	GMPR2	cis	parietal	SCAN
rs7148384	DHRS1	cis	cerebellum	SCAN
rs7148384	NFATC4	cis	cerebellum	SCAN
rs7148384	ADCY4	cis	cerebellum	SCAN
rs7148384	OSGEP	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24821200-24829200	Weak transcription	Placenta	Placenta
2	chr14:24823400-24829800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:24824800-24829800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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