Variant report

Variant	rs12432022
Chromosome Location	chr14:25292822-25292823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1461642	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17200659	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17200666	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17795604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1957760	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2199394	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2199395	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4983023	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4983024	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61976829	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61976831	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs725230	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8019575	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs854314	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs965383	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25285200-25302200	Weak transcription	HSMM	muscle
2	chr14:25285800-25297800	Weak transcription	HSMMtube	muscle
3	chr14:25286000-25296800	Weak transcription	Esophagus	oesophagus
4	chr14:25287400-25306200	Weak transcription	Brain Anterior Caudate	brain
5	chr14:25287800-25306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr14:25288000-25309400	Weak transcription	Lung	lung
7	chr14:25288400-25304400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:25288400-25309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:25288600-25295600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:25288600-25302200	Weak transcription	Left Ventricle	heart
11	chr14:25288600-25322800	Weak transcription	Placenta	Placenta
12	chr14:25288800-25308000	Weak transcription	Fetal Lung	lung
13	chr14:25288800-25317400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:25289200-25309400	Weak transcription	Pancreas	Pancrea
15	chr14:25290000-25300800	Weak transcription	HepG2	liver
16	chr14:25290200-25296000	Weak transcription	Liver	Liver
17	chr14:25290800-25303200	Weak transcription	Right Ventricle	heart
18	chr14:25291600-25298000	Weak transcription	Fetal Intestine Large	intestine
19	chr14:25291600-25298200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links