Variant report

Variant	rs17200666
Chromosome Location	chr14:25303549-25303550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12432022	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1461642	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17200659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17795604	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1957760	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2199394	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2199395	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4983023	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4983024	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61976829	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61976831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs725230	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8019575	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs854314	0.91[ASN][1000 genomes]
rs965383	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25287400-25306200	Weak transcription	Brain Anterior Caudate	brain
2	chr14:25287800-25306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:25288000-25309400	Weak transcription	Lung	lung
4	chr14:25288400-25304400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:25288400-25309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:25288600-25322800	Weak transcription	Placenta	Placenta
7	chr14:25288800-25308000	Weak transcription	Fetal Lung	lung
8	chr14:25288800-25317400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:25289200-25309400	Weak transcription	Pancreas	Pancrea
10	chr14:25298400-25306600	Weak transcription	HSMMtube	muscle
11	chr14:25299000-25309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:25299400-25307400	Weak transcription	Fetal Intestine Large	intestine
13	chr14:25299600-25305000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:25299800-25307800	Weak transcription	Fetal Intestine Small	intestine
15	chr14:25301600-25305000	Weak transcription	HepG2	liver
16	chr14:25302600-25306600	Weak transcription	Fetal Muscle Leg	muscle
17	chr14:25302800-25306600	Weak transcription	Fetal Heart	heart
18	chr14:25303400-25304800	Strong transcription	HSMM	muscle
19	chr14:25303400-25306600	Weak transcription	Left Ventricle	heart
20	chr14:25303400-25308200	Weak transcription	Right Ventricle	heart

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