Variant report

Variant	rs12432197
Chromosome Location	chr14:69088185-69088186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69086671..69090212-chr14:69090936..69094755,4	K562	blood:
2	chr14:69086250..69089707-chr14:69092860..69097786,7	MCF-7	breast:
3	chr14:69086694..69088266-chr14:69281564..69284434,2	K562	blood:
4	chr14:69086694..69088416-chr14:69280164..69284434,3	K562	blood:
5	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10483815	0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs12882449	0.90[ASN][1000 genomes]
rs12890235	0.89[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs17756615	0.90[ASN][1000 genomes]
rs2145153	0.83[ASW][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2145154	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2273486	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs8010235	0.94[JPT][hapmap];0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12432197	ZBTB25	cis	parietal	SCAN
rs12432197	ACTN1	cis	parietal	SCAN
rs12432197	FUT8	cis	cerebellum	SCAN
rs12432197	GPX2	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69084800-69088200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:69084800-69088200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:69085200-69088200	Weak transcription	Primary T cells from cord blood	blood
4	chr14:69085400-69089000	Enhancers	Placenta	Placenta
5	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69085800-69091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:69086000-69088800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:69086000-69088800	Enhancers	Fetal Intestine Small	intestine
9	chr14:69086200-69088400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:69086200-69088800	Enhancers	Psoas Muscle	Psoas
11	chr14:69086200-69089000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr14:69086200-69089000	Enhancers	Fetal Intestine Large	intestine
13	chr14:69086200-69090200	Enhancers	HSMMtube	muscle
14	chr14:69086200-69091400	Enhancers	Fetal Muscle Leg	muscle
15	chr14:69086400-69089000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:69086400-69090200	Enhancers	Stomach Smooth Muscle	stomach
17	chr14:69086600-69088600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:69086600-69089000	Enhancers	Left Ventricle	heart
19	chr14:69086600-69089000	Enhancers	Right Atrium	heart
20	chr14:69086600-69089200	Enhancers	NHDF-Ad	bronchial
21	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:69086800-69088200	Enhancers	Hela-S3	cervix
23	chr14:69087000-69089000	Enhancers	Ovary	ovary
24	chr14:69087000-69090200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr14:69087000-69098400	Weak transcription	NHLF	lung
26	chr14:69087200-69088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:69087200-69088200	Weak transcription	Aorta	Aorta
28	chr14:69087200-69088600	Enhancers	Fetal Heart	heart
29	chr14:69087200-69091400	Enhancers	Fetal Stomach	stomach
30	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
32	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
33	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:69087600-69088400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr14:69087600-69089000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr14:69087600-69089000	Enhancers	Right Ventricle	heart
37	chr14:69087600-69089600	Weak transcription	HSMM	muscle
38	chr14:69087600-69090400	Enhancers	Fetal Muscle Trunk	muscle
39	chr14:69087600-69090800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:69087800-69088600	Enhancers	Fetal Lung	lung
41	chr14:69087800-69088800	Enhancers	Brain Cingulate Gyrus	brain
42	chr14:69087800-69089000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:69087800-69092800	Weak transcription	HepG2	liver
44	chr14:69088000-69088400	Enhancers	Brain Substantia Nigra	brain
45	chr14:69088000-69088800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:69088000-69088800	Enhancers	Brain Anterior Caudate	brain
47	chr14:69088000-69088800	Enhancers	Small Intestine	intestine
48	chr14:69088000-69088800	Enhancers	Stomach Mucosa	stomach
49	chr14:69088000-69088800	Enhancers	Osteobl	bone
50	chr14:69088000-69089000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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