Variant report

Variant	rs2145154
Chromosome Location	chr14:69095847-69095848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:69095777-69096128	H1-hESC	embryonic stem cell:	n/a	n/a
2	TAF1	chr14:69094882-69096042	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr14:69094883-69096211	MCF-7	breast:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
4	MAX	chr14:69095437-69095906	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562
5	GATA3	chr14:69095089-69096198	MCF-7	breast:	n/a	chr14:69095338-69095347
6	GATA3	chr14:69094900-69096222	MCF-7	breast:	n/a	chr14:69095338-69095347
7	YY1	chr14:69095382-69096148	H1-hESC	embryonic stem cell:	n/a	chr14:69095558-69095572
8	SIN3A	chr14:69095604-69096127	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr14:69095627-69096089	H1-hESC	embryonic stem cell:	n/a	n/a
10	E2F6	chr14:69095492-69096023	H1-hESC	embryonic stem cell:	n/a	n/a
11	HDAC2	chr14:69095405-69096166	MCF-7	breast:	n/a	chr14:69095439-69095453
12	GATA3	chr14:69095227-69096142	T-47D	breast:	n/a	chr14:69095338-69095347
13	CEBPB	chr14:69095008-69096151	MCF-7	breast:	n/a	chr14:69096058-69096069
14	ZNF143	chr14:69095635-69096080	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr14:69094764-69096219	H1-hESC	embryonic stem cell:	n/a	n/a
16	GATA3	chr14:69094959-69096109	T-47D	breast:	n/a	chr14:69095338-69095347
17	TBP	chr14:69095497-69096174	H1-hESC	embryonic stem cell:	n/a	n/a
18	MAX	chr14:69094913-69095980	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
19	FOXA1	chr14:69095203-69096136	T-47D	breast:	n/a	n/a
20	E2F6	chr14:69095421-69096021	H1-hESC	embryonic stem cell:	n/a	n/a
21	NR2F2	chr14:69094903-69096159	MCF-7	breast:	n/a	n/a
22	MAX	chr14:69094817-69095932	H1-hESC	embryonic stem cell:	n/a	chr14:69095552-69095562 chr14:69095383-69095394
23	RAD21	chr14:69095234-69096264	MCF-7	breast:	n/a	chr14:69095710-69095722
24	TCF7L2	chr14:69095499-69095930	MCF-7	breast:	n/a	n/a
25	ESR1	chr14:69095372-69096036	T-47D	breast:	n/a	n/a
26	FOXA1	chr14:69095210-69096163	T-47D	breast:	n/a	n/a
27	EP300	chr14:69095031-69096106	T-47D	breast:	n/a	chr14:69095157-69095173 chr14:69095170-69095186
28	HDAC2	chr14:69094790-69096237	MCF-7	breast:	n/a	chr14:69095439-69095453 chr14:69095112-69095121
29	CTCF	chr14:69095780-69095930	HEEpiC	esophagus:	n/a	chr14:69095838-69095847
30	EP300	chr14:69095284-69096157	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:69095355..69099854-chr14:69250960..69255583,6	MCF-7	breast:
2	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
3	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
4	chr14:69094450..69096526-chr21:43784501..43786843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	TF binding region
ENSG00000160182	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10483815	0.88[JPT][hapmap]
rs12432197	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12890235	0.88[JPT][hapmap]
rs2145153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2273486	0.83[JPT][hapmap]
rs8010235	0.89[JPT][hapmap]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:69087000-69098400	Weak transcription	NHLF	lung
3	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
5	chr14:69092400-69101400	Enhancers	Right Atrium	heart
6	chr14:69092600-69096400	Enhancers	Fetal Heart	heart
7	chr14:69092800-69098800	Enhancers	HepG2	liver
8	chr14:69093000-69104400	Enhancers	Fetal Lung	lung
9	chr14:69093400-69099400	Weak transcription	Lung	lung
10	chr14:69093400-69099400	Weak transcription	Psoas Muscle	Psoas
11	chr14:69093400-69099800	Weak transcription	NHDF-Ad	bronchial
12	chr14:69093600-69096000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:69093600-69097200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:69094200-69096000	Enhancers	Fetal Muscle Trunk	muscle
15	chr14:69094200-69096800	Enhancers	Adipose Nuclei	Adipose
16	chr14:69094200-69099800	Weak transcription	HSMMtube	muscle
17	chr14:69094400-69096200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:69094400-69096800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69094400-69096800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:69094400-69097000	Weak transcription	Right Ventricle	heart
21	chr14:69094400-69098200	Weak transcription	Ovary	ovary
22	chr14:69094400-69098200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr14:69094400-69098400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:69094400-69099800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr14:69094600-69097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:69094600-69097800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:69094800-69096000	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
28	chr14:69094800-69096000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr14:69094800-69096000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:69094800-69096000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:69094800-69096000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:69094800-69096000	Active TSS	Colonic Mucosa	Colon
33	chr14:69094800-69096000	Flanking Active TSS	Fetal Intestine Small	intestine
34	chr14:69094800-69096000	Flanking Active TSS	NHEK	skin
35	chr14:69095000-69096000	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr14:69095000-69096000	Enhancers	Primary hematopoietic stem cells	blood
37	chr14:69095000-69096000	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr14:69095000-69096400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:69095000-69096800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:69095000-69097400	Weak transcription	Aorta	Aorta
41	chr14:69095000-69100400	Weak transcription	Fetal Kidney	kidney
42	chr14:69095200-69096000	Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr14:69095200-69096000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:69095200-69096400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:69095200-69096800	Weak transcription	Colon Smooth Muscle	Colon
46	chr14:69095200-69097000	Weak transcription	Left Ventricle	heart
47	chr14:69095200-69104200	Weak transcription	NH-A	brain
48	chr14:69095200-69104400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:69095400-69096000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr14:69095400-69096000	Flanking Active TSS	H1 Cell Line	embryonic stem cell

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