Variant report

Variant	rs12432476
Chromosome Location	chr14:35838369-35838370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35825704..35827505-chr14:35837776..35839385,2	MCF-7	breast:
2	chr14:35711794..35714036-chr14:35837683..35839377,2	MCF-7	breast:
3	chr14:35834445..35839728-chr14:35850287..35856081,6	K562	blood:
4	chr14:35761479..35764618-chr14:35836402..35840323,3	MCF-7	breast:
5	chr14:35821826..35833396-chr14:35833928..35840799,21	K562	blood:
6	chr14:35833474..35838463-chr14:35839143..35843538,8	K562	blood:
7	chr14:35833202..35845291-chr14:35869974..35876968,23	K562	blood:

Variant related genes	Relation type
ENSG00000100902	Chromatin interaction
ENSG00000258860	Chromatin interaction
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10135435	0.94[ASN][1000 genomes]
rs10136627	0.99[ASN][1000 genomes]
rs10140922	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs11156884	0.94[ASN][1000 genomes]
rs1475045	0.90[ASN][1000 genomes]
rs17114075	0.94[CHB][hapmap]
rs2145623	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4981288	0.85[ASN][1000 genomes]
rs4982267	0.90[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs4982268	0.88[ASN][1000 genomes]
rs57645874	0.98[ASN][1000 genomes]
rs72666634	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv528501	chr14:35825436-35840678	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35821600-35843800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:35831600-35839000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr14:35831600-35839400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:35833400-35839200	Enhancers	Placenta	Placenta
5	chr14:35834200-35838400	Enhancers	NHLF	lung
6	chr14:35834200-35838600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:35834200-35838600	Enhancers	HSMMtube	muscle
8	chr14:35834200-35838600	Enhancers	NH-A	brain
9	chr14:35834200-35839400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:35834200-35839400	Enhancers	Stomach Smooth Muscle	stomach
11	chr14:35834200-35840000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:35834200-35840200	Enhancers	Primary hematopoietic stem cells	blood
13	chr14:35834400-35838400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:35834400-35838400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:35834400-35838600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:35834400-35838600	Enhancers	Fetal Heart	heart
17	chr14:35834400-35838600	Enhancers	Right Atrium	heart
18	chr14:35834400-35839400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:35834400-35839600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:35834400-35839600	Enhancers	Fetal Muscle Leg	muscle
21	chr14:35834400-35839600	Enhancers	Thymus	Thymus
22	chr14:35834400-35839800	Enhancers	Adipose Nuclei	Adipose
23	chr14:35834400-35840200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr14:35834800-35838400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:35834800-35838600	Enhancers	HSMM	muscle
26	chr14:35834800-35839000	Enhancers	NHDF-Ad	bronchial
27	chr14:35835400-35838400	Weak transcription	NHEK	skin
28	chr14:35835400-35838800	Enhancers	Hela-S3	cervix
29	chr14:35835600-35838400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:35835600-35838400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr14:35835600-35840400	Enhancers	Primary B cells from cord blood	blood
32	chr14:35835800-35839000	Weak transcription	HUVEC	blood vessel
33	chr14:35836000-35838400	Weak transcription	Psoas Muscle	Psoas
34	chr14:35836200-35838600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:35836200-35838600	Enhancers	Brain Hippocampus Middle	brain
36	chr14:35836200-35838600	Weak transcription	Esophagus	oesophagus
37	chr14:35836200-35839000	Enhancers	A549	lung
38	chr14:35836200-35839600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr14:35836400-35838400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr14:35836400-35838400	Enhancers	Fetal Lung	lung
41	chr14:35836400-35838600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr14:35836600-35838400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr14:35837000-35838600	Weak transcription	HMEC	breast
44	chr14:35837000-35843400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr14:35837400-35838400	Weak transcription	Lung	lung
46	chr14:35837400-35838800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:35837400-35839800	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr14:35837400-35852400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr14:35837600-35838400	Weak transcription	Brain Anterior Caudate	brain
50	chr14:35837600-35838400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links