Variant report

Variant	rs10136627
Chromosome Location	chr14:35841489-35841490
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35833474..35838463-chr14:35839143..35843538,8	K562	blood:
2	chr14:35839386..35842775-chr14:35870921..35874153,4	K562	blood:
3	chr14:35833202..35845291-chr14:35869974..35876968,23	K562	blood:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10083375	0.91[EUR][1000 genomes]
rs10083387	0.91[EUR][1000 genomes]
rs10132397	0.91[EUR][1000 genomes]
rs10135277	0.91[EUR][1000 genomes]
rs10135435	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10140133	0.89[EUR][1000 genomes]
rs10140922	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10148567	0.87[EUR][1000 genomes]
rs10162508	0.82[EUR][1000 genomes]
rs11156884	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11625311	0.84[EUR][1000 genomes]
rs12385925	0.93[EUR][1000 genomes]
rs12431453	0.85[AFR][1000 genomes]
rs12432476	0.99[ASN][1000 genomes]
rs12435379	0.88[EUR][1000 genomes]
rs12436216	0.81[EUR][1000 genomes]
rs1475045	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2145623	0.86[ASN][1000 genomes]
rs28589517	0.89[EUR][1000 genomes]
rs28627414	0.85[EUR][1000 genomes]
rs4356377	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4981285	0.84[EUR][1000 genomes]
rs4981288	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4982258	0.91[EUR][1000 genomes]
rs4982259	0.90[EUR][1000 genomes]
rs4982260	0.91[EUR][1000 genomes]
rs4982261	0.91[EUR][1000 genomes]
rs4982262	0.91[EUR][1000 genomes]
rs4982265	0.94[EUR][1000 genomes]
rs4982267	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4982268	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57645874	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58519555	0.93[EUR][1000 genomes]
rs72666622	0.88[EUR][1000 genomes]
rs72666634	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs762010	0.86[EUR][1000 genomes]
rs8003074	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35821600-35843800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:35837000-35843400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:35837400-35852400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:35837800-35843200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:35838400-35842800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:35838400-35843200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:35838400-35843600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:35838600-35843200	Weak transcription	Osteobl	bone
9	chr14:35838600-35843600	Weak transcription	NH-A	brain
10	chr14:35838600-35843800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:35838800-35847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:35839000-35843400	Weak transcription	NHDF-Ad	bronchial
13	chr14:35839000-35843800	Weak transcription	Brain Anterior Caudate	brain
14	chr14:35839200-35841800	Weak transcription	Right Ventricle	heart
15	chr14:35839200-35843800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:35839600-35842200	Weak transcription	Thymus	Thymus
17	chr14:35839600-35843200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr14:35839600-35843600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:35839600-35845000	Weak transcription	Spleen	Spleen
20	chr14:35839600-35852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:35839800-35841600	Weak transcription	Hela-S3	cervix
22	chr14:35839800-35843200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:35839800-35843400	Weak transcription	HUVEC	blood vessel
24	chr14:35839800-35843400	Weak transcription	K562	blood
25	chr14:35840000-35841600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:35840000-35843800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:35840200-35841800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr14:35840200-35845000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr14:35840400-35843800	Weak transcription	HMEC	breast
30	chr14:35840800-35842000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:35841200-35841600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:35841400-35842000	Bivalent Enhancer	HepG2	liver

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