Variant report

Variant	rs11625311
Chromosome Location	chr14:35830585-35830586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35827417..35829276-chr14:35829488..35832046,2	K562	blood:
2	chr14:35823382..35826221-chr14:35830065..35831652,2	K562	blood:
3	chr14:35829865..35831860-chr14:35873072..35875274,2	K562	blood:
4	chr14:35829669..35831731-chr14:35831828..35834789,2	MCF-7	breast:
5	chr14:35826145..35827656-chr14:35829547..35831516,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258860	Chromatin interaction
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10083375	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10083387	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10132397	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10135277	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10135435	0.82[EUR][1000 genomes]
rs10136627	0.84[EUR][1000 genomes]
rs10140133	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10140922	0.88[EUR][1000 genomes]
rs10148567	0.82[EUR][1000 genomes]
rs12385925	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12435379	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1475045	0.81[EUR][1000 genomes]
rs28589517	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28627414	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4981288	0.88[EUR][1000 genomes]
rs4982258	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4982259	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4982260	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4982261	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4982262	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4982265	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4982267	0.88[EUR][1000 genomes]
rs4982268	0.88[EUR][1000 genomes]
rs57645874	0.84[EUR][1000 genomes]
rs58519555	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72666622	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72666634	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs762010	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8003074	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
4	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv528501	chr14:35825436-35840678	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35817200-35834400	Weak transcription	Esophagus	oesophagus
2	chr14:35821600-35843800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:35822200-35831600	Weak transcription	Colonic Mucosa	Colon
4	chr14:35822400-35832000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:35822400-35832200	Weak transcription	Right Atrium	heart
6	chr14:35822400-35834400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:35822400-35834600	Weak transcription	Gastric	stomach
8	chr14:35822600-35831600	Weak transcription	Adipose Nuclei	Adipose
9	chr14:35822600-35836400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr14:35822800-35831600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:35823000-35831600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:35823400-35834200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:35823600-35831600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:35825600-35831600	Weak transcription	Pancreas	Pancrea
15	chr14:35825600-35834200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr14:35825600-35834200	Weak transcription	Fetal Thymus	thymus
17	chr14:35825600-35834400	Weak transcription	Left Ventricle	heart
18	chr14:35825600-35835200	Weak transcription	Aorta	Aorta
19	chr14:35825800-35831600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr14:35825800-35833400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:35825800-35834200	Weak transcription	HMEC	breast
22	chr14:35826000-35831600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:35826000-35834400	Weak transcription	Fetal Kidney	kidney
24	chr14:35826000-35834400	Weak transcription	Thymus	Thymus
25	chr14:35826200-35831600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:35826200-35831600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:35826200-35831600	Weak transcription	Fetal Lung	lung
28	chr14:35826200-35831600	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr14:35826200-35831600	Weak transcription	A549	lung
30	chr14:35826200-35831600	Weak transcription	HSMMtube	muscle
31	chr14:35826200-35831600	Weak transcription	Osteobl	bone
32	chr14:35826200-35831800	Weak transcription	Liver	Liver
33	chr14:35826200-35834400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:35826200-35834400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:35826600-35831800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:35826600-35833400	Weak transcription	Fetal Intestine Small	intestine
37	chr14:35827400-35834200	Weak transcription	Hela-S3	cervix
38	chr14:35827600-35836200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr14:35828800-35832200	Weak transcription	K562	blood
40	chr14:35829000-35830600	Enhancers	Placenta	Placenta
41	chr14:35829600-35830600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr14:35829600-35830600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:35829600-35831000	Enhancers	GM12878-XiMat	blood
44	chr14:35830000-35830600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:35830000-35830600	Enhancers	HepG2	liver
46	chr14:35830400-35834200	Weak transcription	NHEK	skin

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