Variant report

Variant	rs28627414
Chromosome Location	chr14:35820462-35820463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10083375	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10083387	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10132397	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10135277	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10135435	0.83[EUR][1000 genomes]
rs10136627	0.85[EUR][1000 genomes]
rs10140133	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10140922	0.88[EUR][1000 genomes]
rs10148567	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10162508	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10438062	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11625311	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12385925	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12435379	0.89[EUR][1000 genomes]
rs12436216	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28589517	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4981285	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4981288	0.88[EUR][1000 genomes]
rs4982258	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982259	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982260	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982261	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982262	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4982265	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4982267	0.88[EUR][1000 genomes]
rs4982268	0.87[EUR][1000 genomes]
rs57645874	0.85[EUR][1000 genomes]
rs58519555	0.91[EUR][1000 genomes]
rs72666622	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72666634	0.88[EUR][1000 genomes]
rs762010	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8003074	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35805800-35821000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:35811800-35821400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:35812200-35821000	Weak transcription	Fetal Heart	heart
4	chr14:35813400-35820800	Weak transcription	Fetal Kidney	kidney
5	chr14:35813600-35820800	Weak transcription	Right Atrium	heart
6	chr14:35814200-35821200	Weak transcription	Primary T cells from cord blood	blood
7	chr14:35814200-35821600	Weak transcription	Colonic Mucosa	Colon
8	chr14:35815000-35820800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr14:35815200-35820800	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:35816200-35821200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:35816600-35823400	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:35817000-35821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:35817000-35821000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:35817000-35821000	Weak transcription	Adipose Nuclei	Adipose
15	chr14:35817000-35821000	Weak transcription	Spleen	Spleen
16	chr14:35817000-35821200	Weak transcription	Gastric	stomach
17	chr14:35817000-35821600	Weak transcription	Pancreas	Pancrea
18	chr14:35817200-35821000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:35817200-35821000	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:35817200-35821000	Weak transcription	Liver	Liver
21	chr14:35817200-35821000	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:35817200-35821000	Weak transcription	Lung	lung
23	chr14:35817200-35821200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:35817200-35821200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:35817200-35821200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr14:35817200-35821200	Weak transcription	Ovary	ovary
27	chr14:35817200-35821400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:35817200-35822200	Weak transcription	Stomach Mucosa	stomach
29	chr14:35817200-35834400	Weak transcription	Esophagus	oesophagus
30	chr14:35817400-35820800	Weak transcription	Placenta	Placenta
31	chr14:35817400-35821000	Weak transcription	K562	blood
32	chr14:35817400-35821200	Weak transcription	Fetal Stomach	stomach
33	chr14:35817400-35821400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr14:35817400-35822000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:35817600-35822000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr14:35817600-35822200	Weak transcription	Fetal Lung	lung
37	chr14:35817800-35821000	Weak transcription	Thymus	Thymus
38	chr14:35817800-35821200	Weak transcription	Primary B cells from cord blood	blood
39	chr14:35817800-35821400	Weak transcription	Fetal Intestine Large	intestine
40	chr14:35818000-35820800	Weak transcription	Fetal Intestine Small	intestine
41	chr14:35818400-35821400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:35819400-35821000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr14:35819400-35821000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr14:35819400-35821400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:35819400-35825400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr14:35819600-35820600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:35819600-35821000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr14:35819600-35821000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:35819600-35821000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr14:35819600-35821200	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links